Analysis of interatomic Contacts of Structural Units in PDB entry:
9WQU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WQU entry

There are 3 chains in PDB entry 9WQU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 134LYS 366
B
 SER 133LYS 366
C
 PRO 134LEU 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9WQU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
141 149Right-handed alpha
Helix 2
AA2
A
165 179Right-handed alpha
Helix 3
AA3
A
189 197Right-handed alpha
Helix 4
AA4
A
208 212Right-handed 310
Helix 5
AA5
A
228 240Right-handed alpha
Helix 6
AA6
A
251 256Right-handed alpha
Helix 7
AA7
A
272 293Right-handed alpha
Helix 8
AA8
A
307 313Right-handed alpha
Helix 9
AA9
A
346 359Right-handed alpha
Helix 10
AB1
B
141 150Right-handed alpha
Helix 11
AB2
B
165 179Right-handed alpha
Helix 12
AB3
B
189 197Right-handed alpha
Helix 13
AB4
B
208 212Right-handed 310
Helix 14
AB5
B
228 240Right-handed alpha
Helix 15
AB6
B
251 256Right-handed alpha
Helix 16
AB7
B
272 293Right-handed alpha
Helix 17
AB8
B
307 313Right-handed alpha
Helix 18
AB9
B
346 359Right-handed alpha
Helix 19
AC1
C
141 150Right-handed alpha
Helix 20
AC2
C
165 179Right-handed alpha
Helix 21
AC3
C
189 197Right-handed alpha
Helix 22
AC4
C
208 212Right-handed 310
Helix 23
AC5
C
228 240Right-handed alpha
Helix 24
AC6
C
251 256Right-handed alpha
Helix 25
AC7
C
272 293Right-handed alpha
Helix 26
AC8
C
307 314Right-handed alpha
Helix 27
AC9
C
346 359Right-handed alpha
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There are 6 sheets in PDB entry 9WQU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
184 187parallel
Strand 3
A
155 160parallel
Strand 4
A
201 206anti-parallel
Strand 5
A
219 221anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
298 303parallel
Strand 3
A
260 265parallel
Strand 4
A
325 329anti-parallel
Strand 5
A
335 337anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 139first strand
Strand 2
B
184 187parallel
Strand 3
B
155 160parallel
Strand 4
B
201 206anti-parallel
Strand 5
B
219 221anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 303first strand
Strand 2
B
260 265parallel
Strand 3
B
325 329anti-parallel
Strand 4
B
335 337anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 138first strand
Strand 2
C
184 187parallel
Strand 3
C
155 160parallel
Strand 4
C
201 206anti-parallel
Strand 5
C
219 221anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
298 303first strand
Strand 2
C
260 265parallel
Strand 3
C
325 329anti-parallel
Strand 4
C
335 337anti-parallel
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