Analysis of interatomic Contacts of Structural Units in PDB entry:
9WQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WQW entry

There is 1 chain in PDB entry 9WQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS -1SER 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9WQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 27Right-handed 310
Helix 2
AA2
A
28 39Right-handed alpha
Helix 3
AA3
A
63 65Right-handed 310
Helix 4
AA4
A
78 91Right-handed alpha
Helix 5
AA5
A
101 104Right-handed 310
Helix 6
AA6
A
105 112Right-handed alpha
Helix 7
AA7
A
130 138Right-handed alpha
Helix 8
AA8
A
139 152Right-handed alpha
Helix 9
AA9
A
159 161Right-handed 310
Helix 10
AB1
A
162 177Right-handed alpha
Helix 11
AB2
A
184 193Right-handed alpha
Helix 12
AB3
A
230 233Right-handed 310
Helix 13
AB4
A
236 252Right-handed alpha
Helix 14
AB5
A
268 280Right-handed alpha
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There are 3 sheets in PDB entry 9WQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
42 48anti-parallel
Strand 3
A
54 61anti-parallel
Strand 4
A
74 75anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
42 48anti-parallel
Strand 3
A
54 61anti-parallel
Strand 4
A
67 72anti-parallel
Strand 5
A
95 99parallel
Strand 6
A
290 293anti-parallel
Strand 7
A
115 116anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
197 204anti-parallel
Strand 3
A
207 216anti-parallel
Strand 4
A
220 228anti-parallel
Strand 5
A
256 258parallel
Strand 6
A
120 126anti-parallel
Strand 7
A
284 288anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il