Analysis of interatomic Contacts of Structural Units in PDB entry:
9WRF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WRF entry

There are 2 chains in PDB entry 9WRF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5TRP 463
B
 ASP 5TRP 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 9WRF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
15 29Right-handed alpha
Helix 3
AA3
A
30 34Right-handed 310
Helix 4
AA4
A
62 67Right-handed alpha
Helix 5
AA5
A
74 88Right-handed alpha
Helix 6
AA6
A
99 112Right-handed alpha
Helix 7
AA7
A
125 142Right-handed alpha
Helix 8
AA8
A
157 164Right-handed alpha
Helix 9
AA9
A
168 173Right-handed alpha
Helix 10
AB1
A
174 176Right-handed 310
Helix 11
AB2
A
201 220Right-handed alpha
Helix 12
AB3
A
242 257Right-handed alpha
Helix 13
AB4
A
276 282Right-handed 310
Helix 14
AB5
A
291 296Right-handed 310
Helix 15
AB6
A
307 313Right-handed alpha
Helix 16
AB7
A
325 342Right-handed alpha
Helix 17
AB8
A
343 366Right-handed alpha
Helix 18
AB9
A
392 406Right-handed alpha
Helix 19
AC1
A
429 449Right-handed alpha
Helix 20
AC2
A
453 458Right-handed 310
Helix 21
AC3
B
7 11Right-handed 310
Helix 22
AC4
B
15 29Right-handed alpha
Helix 23
AC5
B
30 34Right-handed 310
Helix 24
AC6
B
62 67Right-handed alpha
Helix 25
AC7
B
74 88Right-handed alpha
Helix 26
AC8
B
98 111Right-handed alpha
Helix 27
AC9
B
125 142Right-handed alpha
Helix 28
AD1
B
157 164Right-handed alpha
Helix 29
AD2
B
168 174Right-handed alpha
Helix 30
AD3
B
201 220Right-handed alpha
Helix 31
AD4
B
242 257Right-handed alpha
Helix 32
AD5
B
276 281Right-handed 310
Helix 33
AD6
B
292 296Right-handed 310
Helix 34
AD7
B
307 312Right-handed alpha
Helix 35
AD8
B
325 342Right-handed alpha
Helix 36
AD9
B
343 366Right-handed alpha
Helix 37
AE1
B
392 406Right-handed alpha
Helix 38
AE2
B
429 450Right-handed alpha
Helix 39
AE3
B
456 460Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 9WRF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
49 52anti-parallel
Strand 3
A
57 60anti-parallel
Strand 4
A
408 409parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 123first strand
Strand 2
A
301 306anti-parallel
Strand 3
A
287 290anti-parallel
Strand 4
A
259 263parallel
Strand 5
A
224 229parallel
Strand 6
A
145 149parallel
Strand 7
A
181 184parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 375first strand
Strand 2
A
378 383anti-parallel
Strand 3
A
419 422anti-parallel
Strand 4
A
412 413anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
49 52anti-parallel
Strand 3
B
57 60anti-parallel
Strand 4
B
408 409parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 123first strand
Strand 2
B
301 306anti-parallel
Strand 3
B
287 290anti-parallel
Strand 4
B
259 264parallel
Strand 5
B
224 229parallel
Strand 6
B
145 149parallel
Strand 7
B
181 184parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 375first strand
Strand 2
B
378 382anti-parallel
Strand 3
B
419 422anti-parallel
Strand 4
B
411 413anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il