Analysis of interatomic Contacts of Structural Units in PDB entry:
9WRI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WRI entry

There are 3 chains in PDB entry 9WRI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29VAL 363
B
 SER 29PHE 362
C
 ASP 885GLU 893
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9WRI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 52Right-handed alpha
Helix 2
AA2
A
64 68Right-handed 310
Helix 3
AA3
A
69 75Right-handed alpha
Helix 4
AA4
A
88 94Right-handed alpha
Helix 5
AA5
A
112 119Right-handed alpha
Helix 6
AA6
A
130 148Right-handed alpha
Helix 7
AA7
A
148 158Right-handed alpha
Helix 8
AA8
A
164 172Right-handed alpha
Helix 9
AA9
A
189 200Right-handed alpha
Helix 10
AB1
A
201 203Right-handed 310
Helix 11
AB2
A
216 221Right-handed alpha
Helix 12
AB3
A
228 236Right-handed alpha
Helix 13
AB4
A
254 259Right-handed alpha
Helix 14
AB5
A
272 276Right-handed 310
Helix 15
AB6
A
277 287Right-handed alpha
Helix 16
AB7
A
326 347Right-handed alpha
Helix 17
AB8
B
47 52Right-handed alpha
Helix 18
AB9
B
64 68Right-handed 310
Helix 19
AC1
B
69 75Right-handed alpha
Helix 20
AC2
B
88 94Right-handed alpha
Helix 21
AC3
B
112 119Right-handed alpha
Helix 22
AC4
B
130 148Right-handed alpha
Helix 23
AC5
B
148 158Right-handed alpha
Helix 24
AC6
B
164 172Right-handed alpha
Helix 25
AC7
B
189 200Right-handed alpha
Helix 26
AC8
B
201 203Right-handed 310
Helix 27
AC9
B
216 221Right-handed alpha
Helix 28
AD1
B
228 236Right-handed alpha
Helix 29
AD2
B
254 259Right-handed alpha
Helix 30
AD3
B
272 276Right-handed 310
Helix 31
AD4
B
277 287Right-handed alpha
Helix 32
AD5
B
326 347Right-handed alpha
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There are 4 sheets in PDB entry 9WRI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
100 103parallel
Strand 3
A
76 81parallel
Strand 4
A
35 38parallel
Strand 5
A
56 59parallel
Strand 6
C
888 889parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
205 209parallel
Strand 3
A
182 186parallel
Strand 4
A
238 241parallel
Strand 5
A
265 269parallel
Strand 6
A
290 295parallel
Strand 7
A
316 318parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
35 38parallel
Strand 3
B
76 81parallel
Strand 4
B
100 103parallel
Strand 5
B
122 124parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
205 209parallel
Strand 3
B
182 186parallel
Strand 4
B
238 241parallel
Strand 5
B
265 269parallel
Strand 6
B
290 295parallel
Strand 7
B
316 318parallel
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