Analysis of interatomic Contacts of Structural Units in PDB entry:
9WSD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WSD entry

There are 4 chains in PDB entry 9WSD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 11	GLY 316
B	ALA 11	GLY 316
C	ALA 11	GLY 316
D	ALA 11	ILE 315

There are 45 helices in PDB entry 9WSD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	30	Right-handed alpha
Helix 2	AA2	A	73	79	Right-handed alpha
Helix 3	AA3	A	87	91	Right-handed 310
Helix 4	AA4	A	107	112	Right-handed alpha
Helix 5	AA5	A	112	120	Right-handed alpha
Helix 6	AA6	A	139	155	Right-handed alpha
Helix 7	AA7	A	166	171	Right-handed alpha
Helix 8	AA8	A	186	191	Right-handed alpha
Helix 9	AA9	A	234	245	Right-handed alpha
Helix 10	AB1	A	271	281	Right-handed alpha
Helix 11	AB2	B	21	26	Right-handed alpha
Helix 12	AB3	B	46	50	Right-handed 310
Helix 13	AB4	B	73	82	Right-handed alpha
Helix 14	AB5	B	83	85	Right-handed 310
Helix 15	AB6	B	108	120	Right-handed alpha
Helix 16	AB7	B	139	145	Right-handed alpha
Helix 17	AB8	B	147	152	Right-handed alpha
Helix 18	AB9	B	153	156	Right-handed 310
Helix 19	AC1	B	164	168	Right-handed 310
Helix 20	AC2	B	181	185	Right-handed 310
Helix 21	AC3	B	186	202	Right-handed alpha
Helix 22	AC4	B	213	218	Right-handed alpha
Helix 23	AC5	B	234	240	Right-handed alpha
Helix 24	AC6	B	274	284	Right-handed alpha
Helix 25	AC7	C	73	80	Right-handed alpha
Helix 26	AC8	C	85	91	Right-handed alpha
Helix 27	AC9	C	112	124	Right-handed alpha
Helix 28	AD1	C	140	144	Right-handed 310
Helix 29	AD2	C	145	150	Right-handed alpha
Helix 30	AD3	C	150	155	Right-handed alpha
Helix 31	AD4	C	177	183	Right-handed alpha
Helix 32	AD5	C	186	191	Right-handed alpha
Helix 33	AD6	C	192	197	Right-handed alpha
Helix 34	AD7	C	236	244	Right-handed alpha
Helix 35	AD8	C	272	277	Right-handed alpha
Helix 36	AD9	C	278	283	Right-handed alpha
Helix 37	AE1	D	73	83	Right-handed alpha
Helix 38	AE2	D	85	90	Right-handed alpha
Helix 39	AE3	D	112	123	Right-handed alpha
Helix 40	AE4	D	135	139	Right-handed 310
Helix 41	AE5	D	140	153	Right-handed alpha
Helix 42	AE6	D	175	177	Right-handed 310
Helix 43	AE7	D	178	197	Right-handed alpha
Helix 44	AE8	D	210	218	Right-handed alpha
Helix 45	AE9	D	240	245	Right-handed alpha

There are 10 sheets in PDB entry 9WSD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	98	101	parallel
Strand 3	A	127	132	parallel
Strand 4	A	159	163	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	227	first strand
Strand 2	A	307	314	anti-parallel
Strand 3	A	260	266	anti-parallel
Strand 4	A	293	298	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	14	17	parallel
Strand 3	B	98	103	parallel
Strand 4	B	127	132	parallel
Strand 5	B	159	163	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	230	first strand
Strand 2	B	306	313	anti-parallel
Strand 3	B	259	265	anti-parallel
Strand 4	B	293	295	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	98	102	parallel
Strand 3	C	127	133	parallel
Strand 4	C	159	164	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	223	first strand
Strand 2	C	313	315	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	230	first strand
Strand 2	C	306	310	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	266	first strand
Strand 2	C	295	298	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	41	first strand
Strand 2	D	13	17	parallel
Strand 3	D	97	103	parallel
Strand 4	D	128	132	parallel
Strand 5	D	159	163	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	230	first strand
Strand 2	D	306	311	anti-parallel
Strand 3	D	262	265	anti-parallel
Strand 4	D	294	296	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WSD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WSD