Analysis of interatomic Contacts of Structural Units in PDB entry:
9WSP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WSP entry

There is 1 chain in PDB entry 9WSP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 27	SER 1147

There are 22 helices in PDB entry 9WSP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	294	304	Right-handed alpha
Helix 2	AA2	B	338	343	Right-handed alpha
Helix 3	AA3	B	349	353	Right-handed 310
Helix 4	AA4	B	364	371	Right-handed alpha
Helix 5	AA5	B	385	389	Right-handed 310
Helix 6	AA6	B	405	407	Right-handed 310
Helix 7	AA7	B	737	744	Right-handed alpha
Helix 8	AA8	B	746	754	Right-handed alpha
Helix 9	AA9	B	755	757	Right-handed 310
Helix 10	AB1	B	760	783	Right-handed alpha
Helix 11	AB2	B	816	824	Right-handed alpha
Helix 12	AB3	B	866	885	Right-handed alpha
Helix 13	AB4	B	886	891	Right-handed alpha
Helix 14	AB5	B	897	908	Right-handed alpha
Helix 15	AB6	B	912	919	Right-handed alpha
Helix 16	AB7	B	919	941	Right-handed alpha
Helix 17	AB8	B	942	944	Right-handed 310
Helix 18	AB9	B	945	966	Right-handed alpha
Helix 19	AC1	B	976	984	Right-handed alpha
Helix 20	AC2	B	985	1033	Right-handed alpha
Helix 21	AC3	B	1116	1118	Right-handed 310
Helix 22	AC4	B	1140	1147	Right-handed alpha

There are 13 sheets in PDB entry 9WSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	65	anti-parallel
Strand 3	B	265	269	anti-parallel
Strand 4	B	90	96	anti-parallel
Strand 5	B	188	197	anti-parallel
Strand 6	B	200	209	anti-parallel
Strand 7	B	224	229	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	141	142	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	117	122	anti-parallel
Strand 5	B	125	129	anti-parallel
Strand 6	B	169	171	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	645	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	573	577	anti-parallel
Strand 6	B	565	567	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	395	403	anti-parallel
Strand 3	B	507	515	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	453	first strand
Strand 2	B	493	497	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	691	696	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1076	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	736	first strand
Strand 2	B	858	860	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1125	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1096	first strand
Strand 2	B	1103	1105	anti-parallel
Strand 3	B	1113	1114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WSP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WSP