Analysis of interatomic Contacts of Structural Units in PDB entry:
9WSQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WSQ entry

There are 6 chains in PDB entry 9WSQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 889	SER 1161
C	MET 1	LYS 163
A	SER 234	PHE 993
E	GLU 889	SER 1161
F	MET 1	LYS 163
D	SER 234	PHE 993

There are124 helices in PDB entry 9WSQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	890	902	Right-handed alpha
Helix 2	AA2	B	905	913	Right-handed alpha
Helix 3	AA3	B	916	924	Right-handed alpha
Helix 4	AA4	B	941	952	Right-handed alpha
Helix 5	AA5	B	964	973	Right-handed alpha
Helix 6	AA6	B	987	992	Right-handed alpha
Helix 7	AA7	B	993	996	Right-handed 310
Helix 8	AA8	B	1014	1023	Right-handed alpha
Helix 9	AA9	B	1051	1062	Right-handed alpha
Helix 10	AB1	B	1077	1085	Right-handed alpha
Helix 11	AB2	B	1090	1095	Right-handed alpha
Helix 12	AB3	B	1109	1114	Right-handed alpha
Helix 13	AB4	B	1115	1117	Right-handed 310
Helix 14	AB5	B	1132	1144	Right-handed alpha
Helix 15	AB6	C	18	22	Right-handed alpha
Helix 16	AB7	C	24	34	Right-handed alpha
Helix 17	AB8	C	51	65	Right-handed alpha
Helix 18	AB9	C	75	80	Right-handed alpha
Helix 19	AC1	C	86	93	Right-handed alpha
Helix 20	AC2	C	96	110	Right-handed alpha
Helix 21	AC3	C	112	126	Right-handed alpha
Helix 22	AC4	C	131	140	Right-handed alpha
Helix 23	AC5	C	146	157	Right-handed alpha
Helix 24	AC6	C	157	163	Right-handed alpha
Helix 25	AC7	A	235	246	Right-handed alpha
Helix 26	AC8	A	251	261	Right-handed alpha
Helix 27	AC9	A	262	268	Right-handed alpha
Helix 28	AD1	A	271	289	Right-handed alpha
Helix 29	AD2	A	298	310	Right-handed alpha
Helix 30	AD3	A	323	341	Right-handed alpha
Helix 31	AD4	A	347	353	Right-handed alpha
Helix 32	AD5	A	356	366	Right-handed alpha
Helix 33	AD6	A	383	398	Right-handed alpha
Helix 34	AD7	A	413	419	Right-handed alpha
Helix 35	AD8	A	428	438	Right-handed alpha
Helix 36	AD9	A	440	452	Right-handed alpha
Helix 37	AE1	A	458	469	Right-handed alpha
Helix 38	AE2	A	475	491	Right-handed alpha
Helix 39	AE3	A	494	501	Right-handed alpha
Helix 40	AE4	A	515	526	Right-handed alpha
Helix 41	AE5	A	550	554	Right-handed 310
Helix 42	AE6	A	555	568	Right-handed alpha
Helix 43	AE7	A	569	572	Right-handed 310
Helix 44	AE8	A	588	600	Right-handed alpha
Helix 45	AE9	A	623	628	Right-handed 310
Helix 46	AF1	A	643	656	Right-handed alpha
Helix 47	AF2	A	672	684	Right-handed alpha
Helix 48	AF3	A	700	712	Right-handed alpha
Helix 49	AF4	A	729	731	Right-handed 310
Helix 50	AF5	A	732	743	Right-handed alpha
Helix 51	AF6	A	757	769	Right-handed alpha
Helix 52	AF7	A	786	797	Right-handed alpha
Helix 53	AF8	A	798	800	Right-handed 310
Helix 54	AF9	A	814	826	Right-handed alpha
Helix 55	AG1	A	843	845	Right-handed 310
Helix 56	AG2	A	846	857	Right-handed alpha
Helix 57	AG3	A	871	883	Right-handed alpha
Helix 58	AG4	A	900	902	Right-handed 310
Helix 59	AG5	A	903	914	Right-handed alpha
Helix 60	AG6	A	928	940	Right-handed alpha
Helix 61	AG7	A	952	957	Right-handed alpha
Helix 62	AG8	A	958	972	Right-handed alpha
Helix 63	AG9	E	890	902	Right-handed alpha
Helix 64	AH1	E	905	913	Right-handed alpha
Helix 65	AH2	E	916	924	Right-handed alpha
Helix 66	AH3	E	941	952	Right-handed alpha
Helix 67	AH4	E	964	973	Right-handed alpha
Helix 68	AH5	E	987	992	Right-handed alpha
Helix 69	AH6	E	993	996	Right-handed 310
Helix 70	AH7	E	1014	1023	Right-handed alpha
Helix 71	AH8	E	1051	1062	Right-handed alpha
Helix 72	AH9	E	1077	1085	Right-handed alpha
Helix 73	AI1	E	1090	1095	Right-handed alpha
Helix 74	AI2	E	1109	1114	Right-handed alpha
Helix 75	AI3	E	1115	1117	Right-handed 310
Helix 76	AI4	E	1132	1144	Right-handed alpha
Helix 77	AI5	F	18	22	Right-handed alpha
Helix 78	AI6	F	24	34	Right-handed alpha
Helix 79	AI7	F	51	65	Right-handed alpha
Helix 80	AI8	F	75	80	Right-handed alpha
Helix 81	AI9	F	86	93	Right-handed alpha
Helix 82	AJ1	F	96	110	Right-handed alpha
Helix 83	AJ2	F	112	126	Right-handed alpha
Helix 84	AJ3	F	131	140	Right-handed alpha
Helix 85	AJ4	F	146	157	Right-handed alpha
Helix 86	AJ5	F	157	163	Right-handed alpha
Helix 87	AJ6	D	235	246	Right-handed alpha
Helix 88	AJ7	D	251	261	Right-handed alpha
Helix 89	AJ8	D	262	268	Right-handed alpha
Helix 90	AJ9	D	271	289	Right-handed alpha
Helix 91	AK1	D	298	310	Right-handed alpha
Helix 92	AK2	D	323	341	Right-handed alpha
Helix 93	AK3	D	347	353	Right-handed alpha
Helix 94	AK4	D	356	366	Right-handed alpha
Helix 95	AK5	D	383	398	Right-handed alpha
Helix 96	AK6	D	413	419	Right-handed alpha
Helix 97	AK7	D	428	438	Right-handed alpha
Helix 98	AK8	D	440	452	Right-handed alpha
Helix 99	AK9	D	458	469	Right-handed alpha
Helix 100	AL1	D	475	491	Right-handed alpha
Helix 101	AL2	D	494	501	Right-handed alpha
Helix 102	AL3	D	515	526	Right-handed alpha
Helix 103	AL4	D	550	554	Right-handed 310
Helix 104	AL5	D	555	568	Right-handed alpha
Helix 105	AL6	D	569	572	Right-handed 310
Helix 106	AL7	D	588	600	Right-handed alpha
Helix 107	AL8	D	623	628	Right-handed 310
Helix 108	AL9	D	643	656	Right-handed alpha
Helix 109	AM1	D	672	684	Right-handed alpha
Helix 110	AM2	D	700	712	Right-handed alpha
Helix 111	AM3	D	729	731	Right-handed 310
Helix 112	AM4	D	732	743	Right-handed alpha
Helix 113	AM5	D	757	769	Right-handed alpha
Helix 114	AM6	D	786	797	Right-handed alpha
Helix 115	AM7	D	798	800	Right-handed 310
Helix 116	AM8	D	814	826	Right-handed alpha
Helix 117	AM9	D	843	845	Right-handed 310
Helix 118	AN1	D	846	857	Right-handed alpha
Helix 119	AN2	D	871	883	Right-handed alpha
Helix 120	AN3	D	900	902	Right-handed 310
Helix 121	AN4	D	903	914	Right-handed alpha
Helix 122	AN5	D	928	940	Right-handed alpha
Helix 123	AN6	D	952	957	Right-handed alpha
Helix 124	AN7	D	958	972	Right-handed alpha

There are 12 sheets in PDB entry 9WSQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	931	933	first strand
Strand 2	B	955	957	parallel
Strand 3	B	980	982	parallel
Strand 4	B	1004	1006	parallel
Strand 5	B	1042	1044	parallel
Strand 6	B	1067	1069	parallel
Strand 7	B	1097	1099	parallel
Strand 8	B	1122	1124	parallel
Strand 9	B	1156	1159	anti-parallel
Strand 10	B	1149	1151	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	13	17	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	A	378	381	anti-parallel
Strand 3	A	369	371	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	514	first strand
Strand 2	A	533	543	parallel
Strand 3	A	579	583	parallel
Strand 4	A	608	612	parallel
Strand 5	A	634	638	parallel
Strand 6	A	663	667	parallel
Strand 7	A	691	693	parallel
Strand 8	A	720	722	parallel
Strand 9	A	748	750	parallel
Strand 10	A	777	779	parallel
Strand 11	A	805	807	parallel
Strand 12	A	834	836	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	587	first strand
Strand 2	A	615	616	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	891	893	first strand
Strand 2	A	919	921	parallel
Strand 3	A	948	950	parallel
Strand 4	A	976	978	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	931	933	first strand
Strand 2	E	955	957	parallel
Strand 3	E	980	982	parallel
Strand 4	E	1004	1006	parallel
Strand 5	E	1042	1044	parallel
Strand 6	E	1067	1069	parallel
Strand 7	E	1097	1099	parallel
Strand 8	E	1122	1124	parallel
Strand 9	E	1156	1159	anti-parallel
Strand 10	E	1149	1151	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	13	17	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	346	first strand
Strand 2	D	378	381	anti-parallel
Strand 3	D	369	371	anti-parallel

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There are 12 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	507	514	first strand
Strand 2	D	533	543	parallel
Strand 3	D	579	583	parallel
Strand 4	D	608	612	parallel
Strand 5	D	634	638	parallel
Strand 6	D	663	667	parallel
Strand 7	D	691	693	parallel
Strand 8	D	720	722	parallel
Strand 9	D	748	750	parallel
Strand 10	D	777	779	parallel
Strand 11	D	805	807	parallel
Strand 12	D	834	836	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	586	587	first strand
Strand 2	D	615	616	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	891	893	first strand
Strand 2	D	919	921	parallel
Strand 3	D	948	950	parallel
Strand 4	D	976	978	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WSQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WSQ