Analysis of interatomic Contacts of Structural Units in PDB entry:
9WT8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WT8 entry

There are 4 chains in PDB entry 9WT8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 27	LYS 448
B	LYS 27	LYS 448
C	LYS 27	LYS 448
D	LYS 27	LYS 448

There are 77 helices in PDB entry 9WT8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	34	Right-handed 310
Helix 2	AA2	A	35	41	Right-handed alpha
Helix 3	AA3	A	45	53	Right-handed alpha
Helix 4	AA4	A	55	59	Right-handed 310
Helix 5	AA5	A	62	72	Right-handed alpha
Helix 6	AA6	A	73	77	Right-handed 310
Helix 7	AA7	A	82	94	Right-handed alpha
Helix 8	AA8	A	95	99	Right-handed 310
Helix 9	AA9	A	106	110	Right-handed 310
Helix 10	AB1	A	111	123	Right-handed alpha
Helix 11	AB2	A	124	129	Right-handed 310
Helix 12	AB3	A	130	150	Right-handed alpha
Helix 13	AB4	A	152	165	Right-handed alpha
Helix 14	AB5	A	169	174	Right-handed alpha
Helix 15	AB6	A	181	186	Right-handed alpha
Helix 16	AB7	A	218	223	Right-handed alpha
Helix 17	AB8	A	241	249	Right-handed alpha
Helix 18	AB9	A	258	264	Right-handed alpha
Helix 19	AC1	A	278	285	Right-handed alpha
Helix 20	AC2	B	31	34	Right-handed 310
Helix 21	AC3	B	35	41	Right-handed alpha
Helix 22	AC4	B	45	53	Right-handed alpha
Helix 23	AC5	B	55	59	Right-handed 310
Helix 24	AC6	B	62	71	Right-handed alpha
Helix 25	AC7	B	72	77	Right-handed 310
Helix 26	AC8	B	82	94	Right-handed alpha
Helix 27	AC9	B	95	99	Right-handed 310
Helix 28	AD1	B	106	110	Right-handed 310
Helix 29	AD2	B	111	123	Right-handed alpha
Helix 30	AD3	B	124	129	Right-handed 310
Helix 31	AD4	B	130	150	Right-handed alpha
Helix 32	AD5	B	152	165	Right-handed alpha
Helix 33	AD6	B	169	174	Right-handed alpha
Helix 34	AD7	B	181	186	Right-handed alpha
Helix 35	AD8	B	218	223	Right-handed alpha
Helix 36	AD9	B	241	249	Right-handed alpha
Helix 37	AE1	B	258	264	Right-handed alpha
Helix 38	AE2	B	278	285	Right-handed alpha
Helix 39	AE3	C	31	34	Right-handed 310
Helix 40	AE4	C	35	41	Right-handed alpha
Helix 41	AE5	C	45	53	Right-handed alpha
Helix 42	AE6	C	55	59	Right-handed 310
Helix 43	AE7	C	62	72	Right-handed alpha
Helix 44	AE8	C	73	77	Right-handed 310
Helix 45	AE9	C	82	94	Right-handed alpha
Helix 46	AF1	C	95	99	Right-handed 310
Helix 47	AF2	C	106	110	Right-handed 310
Helix 48	AF3	C	111	123	Right-handed alpha
Helix 49	AF4	C	124	129	Right-handed 310
Helix 50	AF5	C	130	150	Right-handed alpha
Helix 51	AF6	C	152	164	Right-handed alpha
Helix 52	AF7	C	169	174	Right-handed alpha
Helix 53	AF8	C	181	186	Right-handed alpha
Helix 54	AF9	C	218	223	Right-handed alpha
Helix 55	AG1	C	241	249	Right-handed alpha
Helix 56	AG2	C	258	264	Right-handed alpha
Helix 57	AG3	C	278	285	Right-handed alpha
Helix 58	AG4	D	31	34	Right-handed 310
Helix 59	AG5	D	35	41	Right-handed alpha
Helix 60	AG6	D	45	53	Right-handed alpha
Helix 61	AG7	D	54	61	Right-handed 310
Helix 62	AG8	D	62	71	Right-handed alpha
Helix 63	AG9	D	72	77	Right-handed 310
Helix 64	AH1	D	82	94	Right-handed alpha
Helix 65	AH2	D	95	99	Right-handed 310
Helix 66	AH3	D	106	110	Right-handed 310
Helix 67	AH4	D	111	123	Right-handed alpha
Helix 68	AH5	D	124	129	Right-handed 310
Helix 69	AH6	D	130	150	Right-handed alpha
Helix 70	AH7	D	152	165	Right-handed alpha
Helix 71	AH8	D	169	174	Right-handed alpha
Helix 72	AH9	D	181	186	Right-handed alpha
Helix 73	AI1	D	218	223	Right-handed alpha
Helix 74	AI2	D	241	249	Right-handed alpha
Helix 75	AI3	D	258	264	Right-handed alpha
Helix 76	AI4	D	278	285	Right-handed alpha
Helix 77	AI5	D	368	370	Right-handed 310

There are 24 sheets in PDB entry 9WT8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	195	first strand
Strand 2	A	208	211	parallel
Strand 3	A	199	200	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	295	first strand
Strand 2	A	306	315	anti-parallel
Strand 3	A	386	394	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	299	first strand
Strand 2	A	302	303	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	352	first strand
Strand 2	A	330	338	anti-parallel
Strand 3	A	414	424	anti-parallel
Strand 4	A	434	444	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	372	378	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	402	first strand
Strand 2	A	405	410	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	195	first strand
Strand 2	B	208	211	parallel
Strand 3	B	199	200	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	295	first strand
Strand 2	B	306	315	anti-parallel
Strand 3	B	386	394	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	299	first strand
Strand 2	B	302	303	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	352	first strand
Strand 2	B	330	338	anti-parallel
Strand 3	B	414	424	anti-parallel
Strand 4	B	434	444	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	372	378	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	402	first strand
Strand 2	B	405	410	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	195	first strand
Strand 2	C	208	211	parallel
Strand 3	C	199	200	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	295	first strand
Strand 2	C	306	315	anti-parallel
Strand 3	C	386	394	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	299	first strand
Strand 2	C	302	303	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	352	first strand
Strand 2	C	330	338	anti-parallel
Strand 3	C	414	424	anti-parallel
Strand 4	C	434	444	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	372	378	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	402	first strand
Strand 2	C	405	410	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	195	first strand
Strand 2	D	208	211	parallel
Strand 3	D	199	200	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	295	first strand
Strand 2	D	306	315	anti-parallel
Strand 3	D	386	394	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	299	first strand
Strand 2	D	302	303	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	352	first strand
Strand 2	D	330	338	anti-parallel
Strand 3	D	414	424	anti-parallel
Strand 4	D	434	444	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	372	378	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	402	first strand
Strand 2	D	405	410	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WT8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WT8