Analysis of interatomic Contacts of Structural Units in PDB entry:
9WT9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WT9 entry

There are 8 chains in PDB entry 9WT9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 27	GLN 238
A	CYS 240	LYS 448
B	LYS 27	GLN 238
B	CYS 240	LYS 448
C	LYS 27	GLN 238
C	CYS 240	LYS 448
D	LYS 27	GLN 238
D	CYS 240	LYS 448

There are 78 helices in PDB entry 9WT9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	34	Right-handed 310
Helix 2	AA2	A	35	41	Right-handed alpha
Helix 3	AA3	A	45	53	Right-handed alpha
Helix 4	AA4	A	55	60	Right-handed alpha
Helix 5	AA5	A	62	72	Right-handed alpha
Helix 6	AA6	A	73	77	Right-handed 310
Helix 7	AA7	A	82	95	Right-handed alpha
Helix 8	AA8	A	96	99	Right-handed 310
Helix 9	AA9	A	106	110	Right-handed 310
Helix 10	AB1	A	111	123	Right-handed alpha
Helix 11	AB2	A	124	129	Right-handed 310
Helix 12	AB3	A	130	150	Right-handed alpha
Helix 13	AB4	A	152	165	Right-handed alpha
Helix 14	AB5	A	169	174	Right-handed alpha
Helix 15	AB6	A	181	186	Right-handed alpha
Helix 16	AB7	A	218	223	Right-handed alpha
Helix 17	AB8	A	241	249	Right-handed alpha
Helix 18	AB9	A	250	254	Right-handed 310
Helix 19	AC1	A	258	264	Right-handed alpha
Helix 20	AC2	A	278	285	Right-handed alpha
Helix 21	AC3	B	31	34	Right-handed 310
Helix 22	AC4	B	35	41	Right-handed alpha
Helix 23	AC5	B	45	53	Right-handed alpha
Helix 24	AC6	B	54	61	Right-handed 310
Helix 25	AC7	B	62	72	Right-handed alpha
Helix 26	AC8	B	73	77	Right-handed 310
Helix 27	AC9	B	82	94	Right-handed alpha
Helix 28	AD1	B	95	99	Right-handed 310
Helix 29	AD2	B	106	110	Right-handed 310
Helix 30	AD3	B	111	123	Right-handed alpha
Helix 31	AD4	B	124	129	Right-handed 310
Helix 32	AD5	B	130	150	Right-handed alpha
Helix 33	AD6	B	152	165	Right-handed alpha
Helix 34	AD7	B	169	174	Right-handed alpha
Helix 35	AD8	B	181	186	Right-handed alpha
Helix 36	AD9	B	217	223	Right-handed alpha
Helix 37	AE1	B	241	249	Right-handed alpha
Helix 38	AE2	B	258	264	Right-handed alpha
Helix 39	AE3	B	278	285	Right-handed alpha
Helix 40	AE4	C	31	34	Right-handed 310
Helix 41	AE5	C	35	41	Right-handed alpha
Helix 42	AE6	C	45	53	Right-handed alpha
Helix 43	AE7	C	55	59	Right-handed 310
Helix 44	AE8	C	62	72	Right-handed alpha
Helix 45	AE9	C	73	77	Right-handed 310
Helix 46	AF1	C	82	95	Right-handed alpha
Helix 47	AF2	C	96	99	Right-handed 310
Helix 48	AF3	C	106	110	Right-handed 310
Helix 49	AF4	C	111	123	Right-handed alpha
Helix 50	AF5	C	124	129	Right-handed 310
Helix 51	AF6	C	130	150	Right-handed alpha
Helix 52	AF7	C	152	164	Right-handed alpha
Helix 53	AF8	C	169	174	Right-handed alpha
Helix 54	AF9	C	181	186	Right-handed alpha
Helix 55	AG1	C	218	223	Right-handed alpha
Helix 56	AG2	C	241	249	Right-handed alpha
Helix 57	AG3	C	258	264	Right-handed alpha
Helix 58	AG4	C	278	285	Right-handed alpha
Helix 59	AG5	D	31	34	Right-handed 310
Helix 60	AG6	D	35	41	Right-handed alpha
Helix 61	AG7	D	45	53	Right-handed alpha
Helix 62	AG8	D	54	61	Right-handed 310
Helix 63	AG9	D	62	72	Right-handed alpha
Helix 64	AH1	D	73	77	Right-handed 310
Helix 65	AH2	D	82	94	Right-handed alpha
Helix 66	AH3	D	95	99	Right-handed 310
Helix 67	AH4	D	106	110	Right-handed 310
Helix 68	AH5	D	111	123	Right-handed alpha
Helix 69	AH6	D	124	129	Right-handed 310
Helix 70	AH7	D	130	150	Right-handed alpha
Helix 71	AH8	D	152	165	Right-handed alpha
Helix 72	AH9	D	169	174	Right-handed alpha
Helix 73	AI1	D	181	186	Right-handed alpha
Helix 74	AI2	D	218	223	Right-handed alpha
Helix 75	AI3	D	241	249	Right-handed alpha
Helix 76	AI4	D	258	264	Right-handed alpha
Helix 77	AI5	D	278	285	Right-handed alpha
Helix 78	AI6	D	368	370	Right-handed 310

There are 24 sheets in PDB entry 9WT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	195	first strand
Strand 2	A	208	211	parallel
Strand 3	A	199	200	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	295	first strand
Strand 2	A	306	315	anti-parallel
Strand 3	A	386	394	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	299	first strand
Strand 2	A	302	303	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	352	first strand
Strand 2	A	330	338	anti-parallel
Strand 3	A	414	424	anti-parallel
Strand 4	A	434	444	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	372	378	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	402	first strand
Strand 2	A	405	410	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	195	first strand
Strand 2	B	208	211	parallel
Strand 3	B	199	200	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	295	first strand
Strand 2	B	306	315	anti-parallel
Strand 3	B	386	394	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	299	first strand
Strand 2	B	302	303	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	352	first strand
Strand 2	B	330	338	anti-parallel
Strand 3	B	414	424	anti-parallel
Strand 4	B	434	444	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	372	378	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	402	first strand
Strand 2	B	405	410	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	195	first strand
Strand 2	C	208	211	parallel
Strand 3	C	199	200	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	295	first strand
Strand 2	C	306	315	anti-parallel
Strand 3	C	386	394	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	299	first strand
Strand 2	C	302	303	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	352	first strand
Strand 2	C	330	338	anti-parallel
Strand 3	C	414	424	anti-parallel
Strand 4	C	434	444	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	372	378	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	402	first strand
Strand 2	C	405	410	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	195	first strand
Strand 2	D	208	211	parallel
Strand 3	D	199	200	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	295	first strand
Strand 2	D	306	315	anti-parallel
Strand 3	D	386	394	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	299	first strand
Strand 2	D	302	303	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	352	first strand
Strand 2	D	330	338	anti-parallel
Strand 3	D	414	424	anti-parallel
Strand 4	D	434	444	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	372	378	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	402	first strand
Strand 2	D	405	410	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WT9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WT9