Analysis of interatomic Contacts of Structural Units in PDB entry:
9WTD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WTD entry

There are 12 chains in PDB entry 9WTD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 38	ASP 175
B	ILE 38	ASP 175
D	ILE 38	ASP 175
E	ILE 38	ASP 175
F	ILE 38	ASP 175
G	ILE 38	ASP 175
H	ILE 38	ASP 175
I	ILE 38	ASP 175
J	ILE 38	ASP 175
K	ILE 38	ASP 175
L	ILE 38	ASP 175
C	ILE 38	ASP 175

There are 60 helices in PDB entry 9WTD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	69	Right-handed alpha
Helix 2	AA2	A	81	95	Right-handed alpha
Helix 3	AA3	A	114	118	Right-handed 310
Helix 4	AA4	A	136	140	Right-handed 310
Helix 5	AA5	A	152	154	Right-handed 310
Helix 6	AA6	B	60	69	Right-handed alpha
Helix 7	AA7	B	81	95	Right-handed alpha
Helix 8	AA8	B	114	118	Right-handed 310
Helix 9	AA9	B	136	140	Right-handed 310
Helix 10	AB1	B	152	154	Right-handed 310
Helix 11	AB2	D	60	69	Right-handed alpha
Helix 12	AB3	D	81	95	Right-handed alpha
Helix 13	AB4	D	114	118	Right-handed 310
Helix 14	AB5	D	136	140	Right-handed 310
Helix 15	AB6	D	152	154	Right-handed 310
Helix 16	AB7	E	60	69	Right-handed alpha
Helix 17	AB8	E	81	95	Right-handed alpha
Helix 18	AB9	E	114	118	Right-handed 310
Helix 19	AC1	E	136	140	Right-handed 310
Helix 20	AC2	E	152	154	Right-handed 310
Helix 21	AC3	F	60	69	Right-handed alpha
Helix 22	AC4	F	81	95	Right-handed alpha
Helix 23	AC5	F	114	118	Right-handed 310
Helix 24	AC6	F	136	140	Right-handed 310
Helix 25	AC7	F	152	154	Right-handed 310
Helix 26	AC8	G	60	69	Right-handed alpha
Helix 27	AC9	G	81	95	Right-handed alpha
Helix 28	AD1	G	114	118	Right-handed 310
Helix 29	AD2	G	136	140	Right-handed 310
Helix 30	AD3	G	152	154	Right-handed 310
Helix 31	AD4	H	60	69	Right-handed alpha
Helix 32	AD5	H	81	95	Right-handed alpha
Helix 33	AD6	H	114	118	Right-handed 310
Helix 34	AD7	H	136	140	Right-handed 310
Helix 35	AD8	H	152	154	Right-handed 310
Helix 36	AD9	I	60	69	Right-handed alpha
Helix 37	AE1	I	81	95	Right-handed alpha
Helix 38	AE2	I	114	118	Right-handed 310
Helix 39	AE3	I	136	140	Right-handed 310
Helix 40	AE4	I	152	154	Right-handed 310
Helix 41	AE5	J	60	69	Right-handed alpha
Helix 42	AE6	J	81	95	Right-handed alpha
Helix 43	AE7	J	114	118	Right-handed 310
Helix 44	AE8	J	136	140	Right-handed 310
Helix 45	AE9	J	152	154	Right-handed 310
Helix 46	AF1	K	60	69	Right-handed alpha
Helix 47	AF2	K	81	95	Right-handed alpha
Helix 48	AF3	K	114	118	Right-handed 310
Helix 49	AF4	K	136	140	Right-handed 310
Helix 50	AF5	K	152	154	Right-handed 310
Helix 51	AF6	L	60	69	Right-handed alpha
Helix 52	AF7	L	81	95	Right-handed alpha
Helix 53	AF8	L	114	118	Right-handed 310
Helix 54	AF9	L	136	140	Right-handed 310
Helix 55	AG1	L	152	154	Right-handed 310
Helix 56	AG2	C	60	69	Right-handed alpha
Helix 57	AG3	C	81	95	Right-handed alpha
Helix 58	AG4	C	114	118	Right-handed 310
Helix 59	AG5	C	136	140	Right-handed 310
Helix 60	AG6	C	152	154	Right-handed 310

There are 24 sheets in PDB entry 9WTD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	50	59	anti-parallel
Strand 3	A	167	173	anti-parallel
Strand 4	A	75	76	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	101	107	anti-parallel
Strand 3	A	146	150	anti-parallel
Strand 4	A	158	161	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	50	59	anti-parallel
Strand 3	B	167	173	anti-parallel
Strand 4	B	75	76	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	101	107	anti-parallel
Strand 3	B	146	150	anti-parallel
Strand 4	B	158	161	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	50	59	anti-parallel
Strand 3	D	167	173	anti-parallel
Strand 4	D	75	76	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	122	first strand
Strand 2	D	101	107	anti-parallel
Strand 3	D	146	150	anti-parallel
Strand 4	D	158	161	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	50	59	anti-parallel
Strand 3	E	167	173	anti-parallel
Strand 4	E	75	76	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	122	first strand
Strand 2	E	101	107	anti-parallel
Strand 3	E	146	150	anti-parallel
Strand 4	E	158	161	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	50	59	anti-parallel
Strand 3	F	167	173	anti-parallel
Strand 4	F	75	76	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	122	first strand
Strand 2	F	101	107	anti-parallel
Strand 3	F	146	150	anti-parallel
Strand 4	F	158	161	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	50	59	anti-parallel
Strand 3	G	167	173	anti-parallel
Strand 4	G	75	76	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	122	first strand
Strand 2	G	101	107	anti-parallel
Strand 3	G	146	150	anti-parallel
Strand 4	G	158	161	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	47	first strand
Strand 2	H	50	59	anti-parallel
Strand 3	H	167	173	anti-parallel
Strand 4	H	75	76	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	122	first strand
Strand 2	H	101	107	anti-parallel
Strand 3	H	146	150	anti-parallel
Strand 4	H	158	161	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	47	first strand
Strand 2	I	50	59	anti-parallel
Strand 3	I	167	173	anti-parallel
Strand 4	I	75	76	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	121	122	first strand
Strand 2	I	101	107	anti-parallel
Strand 3	I	146	150	anti-parallel
Strand 4	I	158	161	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	47	first strand
Strand 2	J	50	59	anti-parallel
Strand 3	J	167	173	anti-parallel
Strand 4	J	75	76	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	121	122	first strand
Strand 2	J	101	107	anti-parallel
Strand 3	J	146	150	anti-parallel
Strand 4	J	158	161	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	47	first strand
Strand 2	K	50	59	anti-parallel
Strand 3	K	167	173	anti-parallel
Strand 4	K	75	76	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	121	122	first strand
Strand 2	K	101	107	anti-parallel
Strand 3	K	146	150	anti-parallel
Strand 4	K	158	161	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	47	first strand
Strand 2	L	50	59	anti-parallel
Strand 3	L	167	173	anti-parallel
Strand 4	L	75	76	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	121	122	first strand
Strand 2	L	101	107	anti-parallel
Strand 3	L	146	150	anti-parallel
Strand 4	L	158	161	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	50	59	anti-parallel
Strand 3	C	167	173	anti-parallel
Strand 4	C	75	76	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	122	first strand
Strand 2	C	101	107	anti-parallel
Strand 3	C	146	150	anti-parallel
Strand 4	C	158	161	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WTD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WTD