Analysis of interatomic Contacts of Structural Units in PDB entry:
9WUD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WUD entry

There are 2 chains in PDB entry 9WUD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 494	LEU 1067
B	ASN 5	LEU 1067

There are 67 helices in PDB entry 9WUD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	508	523	Right-handed alpha
Helix 2	AA2	A	534	537	Right-handed 310
Helix 3	AA3	A	561	569	Right-handed alpha
Helix 4	AA4	A	596	609	Right-handed alpha
Helix 5	AA5	A	625	645	Right-handed alpha
Helix 6	AA6	A	667	671	Right-handed 310
Helix 7	AA7	A	692	696	Right-handed 310
Helix 8	AA8	A	725	736	Right-handed alpha
Helix 9	AA9	A	764	771	Right-handed alpha
Helix 10	AB1	A	779	789	Right-handed alpha
Helix 11	AB2	A	792	803	Right-handed alpha
Helix 12	AB3	A	806	812	Right-handed alpha
Helix 13	AB4	A	818	826	Right-handed alpha
Helix 14	AB5	A	832	840	Right-handed alpha
Helix 15	AB6	A	883	889	Right-handed alpha
Helix 16	AB7	A	922	925	Right-handed 310
Helix 17	AB8	A	926	943	Right-handed alpha
Helix 18	AB9	A	963	973	Right-handed alpha
Helix 19	AC1	A	992	1000	Right-handed alpha
Helix 20	AC2	A	1000	1011	Right-handed alpha
Helix 21	AC3	A	1023	1039	Right-handed alpha
Helix 22	AC4	A	1042	1056	Right-handed alpha
Helix 23	AC5	B	13	17	Right-handed 310
Helix 24	AC6	B	18	22	Right-handed 310
Helix 25	AC7	B	26	39	Right-handed alpha
Helix 26	AC8	B	56	64	Right-handed alpha
Helix 27	AC9	B	75	85	Right-handed alpha
Helix 28	AD1	B	87	91	Right-handed 310
Helix 29	AD2	B	95	106	Right-handed alpha
Helix 30	AD3	B	107	113	Right-handed 310
Helix 31	AD4	B	114	134	Right-handed alpha
Helix 32	AD5	B	144	161	Right-handed alpha
Helix 33	AD6	B	165	169	Right-handed 310
Helix 34	AD7	B	173	191	Right-handed alpha
Helix 35	AD8	B	193	200	Right-handed alpha
Helix 36	AD9	B	200	227	Right-handed alpha
Helix 37	AE1	B	235	243	Right-handed alpha
Helix 38	AE2	B	253	282	Right-handed alpha
Helix 39	AE3	B	286	301	Right-handed alpha
Helix 40	AE4	B	307	312	Right-handed alpha
Helix 41	AE5	B	314	328	Right-handed alpha
Helix 42	AE6	B	361	366	Right-handed alpha
Helix 43	AE7	B	379	384	Right-handed 310
Helix 44	AE8	B	399	403	Right-handed 310
Helix 45	AE9	B	406	424	Right-handed alpha
Helix 46	AF1	B	508	524	Right-handed alpha
Helix 47	AF2	B	561	570	Right-handed alpha
Helix 48	AF3	B	591	595	Right-handed 310
Helix 49	AF4	B	596	610	Right-handed alpha
Helix 50	AF5	B	625	645	Right-handed alpha
Helix 51	AF6	B	650	654	Right-handed 310
Helix 52	AF7	B	692	696	Right-handed 310
Helix 53	AF8	B	725	737	Right-handed alpha
Helix 54	AF9	B	764	771	Right-handed alpha
Helix 55	AG1	B	779	789	Right-handed alpha
Helix 56	AG2	B	792	801	Right-handed alpha
Helix 57	AG3	B	807	812	Right-handed alpha
Helix 58	AG4	B	818	824	Right-handed alpha
Helix 59	AG5	B	832	839	Right-handed alpha
Helix 60	AG6	B	882	889	Right-handed alpha
Helix 61	AG7	B	922	924	Right-handed 310
Helix 62	AG8	B	925	943	Right-handed alpha
Helix 63	AG9	B	963	973	Right-handed alpha
Helix 64	AH1	B	992	1000	Right-handed alpha
Helix 65	AH2	B	1000	1011	Right-handed alpha
Helix 66	AH3	B	1023	1040	Right-handed alpha
Helix 67	AH4	B	1042	1056	Right-handed alpha

There are 16 sheets in PDB entry 9WUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	532	first strand
Strand 2	A	499	504	parallel
Strand 3	A	545	551	parallel
Strand 4	A	580	587	parallel
Strand 5	A	612	613	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	532	first strand
Strand 2	A	499	504	parallel
Strand 3	A	545	551	parallel
Strand 4	A	580	587	parallel
Strand 5	A	618	621	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	662	first strand
Strand 2	B	743	746	anti-parallel
Strand 3	B	761	763	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	860	866	first strand
Strand 2	A	699	705	anti-parallel
Strand 3	A	680	689	anti-parallel
Strand 4	A	895	898	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	718	first strand
Strand 2	A	900	901	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	761	763	first strand
Strand 2	A	743	748	anti-parallel
Strand 3	B	660	664	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	772	773	first strand
Strand 2	A	841	842	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	869	871	first strand
Strand 2	A	878	880	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	977	979	first strand
Strand 2	A	949	952	parallel
Strand 3	A	917	920	parallel
Strand 4	A	1013	1019	parallel
Strand 5	A	1059	1064	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	45	first strand
Strand 2	B	50	54	anti-parallel
Strand 3	B	356	360	parallel
Strand 4	B	333	338	anti-parallel
Strand 5	B	69	71	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	449	454	anti-parallel
Strand 3	B	425	428	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	344	first strand
Strand 2	B	348	350	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	532	first strand
Strand 2	B	499	504	parallel
Strand 3	B	545	551	parallel
Strand 4	B	580	587	parallel
Strand 5	B	612	613	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	532	first strand
Strand 2	B	499	504	parallel
Strand 3	B	545	551	parallel
Strand 4	B	580	587	parallel
Strand 5	B	618	621	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	720	first strand
Strand 2	B	895	901	anti-parallel
Strand 3	B	680	689	anti-parallel
Strand 4	B	699	705	anti-parallel
Strand 5	B	860	866	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	977	979	first strand
Strand 2	B	949	952	parallel
Strand 3	B	917	920	parallel
Strand 4	B	1013	1016	parallel
Strand 5	B	1059	1061	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WUD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WUD