Analysis of interatomic Contacts of Structural Units in PDB entry:
9WUJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WUJ entry

There are 4 chains in PDB entry 9WUJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 11	SER 310
B	GLN 12	SER 310
C	GLN 12	SER 310
D	LEU 10	SER 310

There are 44 helices in PDB entry 9WUJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	32	Right-handed alpha
Helix 2	AA2	A	42	53	Right-handed alpha
Helix 3	AA3	A	67	79	Right-handed alpha
Helix 4	AA4	A	95	106	Right-handed alpha
Helix 5	AA5	A	116	139	Right-handed alpha
Helix 6	AA6	A	151	170	Right-handed alpha
Helix 7	AA7	A	182	191	Right-handed alpha
Helix 8	AA8	A	191	210	Right-handed alpha
Helix 9	AA9	A	233	250	Right-handed alpha
Helix 10	AB1	A	274	278	Right-handed 310
Helix 11	AB2	A	286	303	Right-handed alpha
Helix 12	AB3	B	21	32	Right-handed alpha
Helix 13	AB4	B	45	53	Right-handed alpha
Helix 14	AB5	B	67	77	Right-handed alpha
Helix 15	AB6	B	95	105	Right-handed alpha
Helix 16	AB7	B	116	141	Right-handed alpha
Helix 17	AB8	B	151	170	Right-handed alpha
Helix 18	AB9	B	182	191	Right-handed alpha
Helix 19	AC1	B	191	209	Right-handed alpha
Helix 20	AC2	B	233	250	Right-handed alpha
Helix 21	AC3	B	274	278	Right-handed 310
Helix 22	AC4	B	286	303	Right-handed alpha
Helix 23	AC5	C	21	32	Right-handed alpha
Helix 24	AC6	C	45	53	Right-handed alpha
Helix 25	AC7	C	67	79	Right-handed alpha
Helix 26	AC8	C	95	105	Right-handed alpha
Helix 27	AC9	C	116	140	Right-handed alpha
Helix 28	AD1	C	151	170	Right-handed alpha
Helix 29	AD2	C	182	191	Right-handed alpha
Helix 30	AD3	C	191	209	Right-handed alpha
Helix 31	AD4	C	233	252	Right-handed alpha
Helix 32	AD5	C	274	278	Right-handed 310
Helix 33	AD6	C	286	303	Right-handed alpha
Helix 34	AD7	D	23	32	Right-handed alpha
Helix 35	AD8	D	42	53	Right-handed alpha
Helix 36	AD9	D	67	79	Right-handed alpha
Helix 37	AE1	D	95	105	Right-handed alpha
Helix 38	AE2	D	116	140	Right-handed alpha
Helix 39	AE3	D	151	170	Right-handed alpha
Helix 40	AE4	D	182	191	Right-handed alpha
Helix 41	AE5	D	191	209	Right-handed alpha
Helix 42	AE6	D	233	250	Right-handed alpha
Helix 43	AE7	D	274	278	Right-handed 310
Helix 44	AE8	D	286	303	Right-handed alpha

There are 8 sheets in PDB entry 9WUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	13	17	parallel
Strand 3	A	57	61	parallel
Strand 4	A	87	91	parallel
Strand 5	A	109	112	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	221	first strand
Strand 2	A	224	230	anti-parallel
Strand 3	A	173	180	anti-parallel
Strand 4	A	266	272	anti-parallel
Strand 5	A	308	309	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	B	13	17	parallel
Strand 3	B	57	61	parallel
Strand 4	B	87	91	parallel
Strand 5	B	109	112	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	221	first strand
Strand 2	B	224	230	anti-parallel
Strand 3	B	173	180	anti-parallel
Strand 4	B	266	272	anti-parallel
Strand 5	B	308	309	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	39	first strand
Strand 2	C	13	17	parallel
Strand 3	C	55	61	parallel
Strand 4	C	87	91	parallel
Strand 5	C	109	112	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	221	first strand
Strand 2	C	224	230	anti-parallel
Strand 3	C	173	180	anti-parallel
Strand 4	C	266	272	anti-parallel
Strand 5	C	308	309	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	39	first strand
Strand 2	D	13	17	parallel
Strand 3	D	57	61	parallel
Strand 4	D	87	91	parallel
Strand 5	D	109	112	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	221	first strand
Strand 2	D	224	230	anti-parallel
Strand 3	D	173	180	anti-parallel
Strand 4	D	266	272	anti-parallel
Strand 5	D	308	309	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WUJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WUJ