Analysis of interatomic Contacts of Structural Units in PDB entry:
9WUP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WUP entry

There are 2 chains in PDB entry 9WUP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 5	LEU 1067
B	ASN 5	LEU 1067

There are 86 helices in PDB entry 9WUP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	17	Right-handed 310
Helix 2	AA2	A	18	22	Right-handed 310
Helix 3	AA3	A	26	38	Right-handed alpha
Helix 4	AA4	A	56	64	Right-handed alpha
Helix 5	AA5	A	75	85	Right-handed alpha
Helix 6	AA6	A	95	106	Right-handed alpha
Helix 7	AA7	A	107	110	Right-handed 310
Helix 8	AA8	A	117	134	Right-handed alpha
Helix 9	AA9	A	143	161	Right-handed alpha
Helix 10	AB1	A	173	192	Right-handed alpha
Helix 11	AB2	A	193	200	Right-handed alpha
Helix 12	AB3	A	200	227	Right-handed alpha
Helix 13	AB4	A	235	243	Right-handed alpha
Helix 14	AB5	A	253	270	Right-handed alpha
Helix 15	AB6	A	270	286	Right-handed alpha
Helix 16	AB7	A	286	301	Right-handed alpha
Helix 17	AB8	A	307	313	Right-handed alpha
Helix 18	AB9	A	314	328	Right-handed alpha
Helix 19	AC1	A	361	365	Right-handed alpha
Helix 20	AC2	A	367	372	Right-handed alpha
Helix 21	AC3	A	379	384	Right-handed 310
Helix 22	AC4	A	399	403	Right-handed 310
Helix 23	AC5	A	406	424	Right-handed alpha
Helix 24	AC6	A	508	524	Right-handed alpha
Helix 25	AC7	A	534	537	Right-handed 310
Helix 26	AC8	A	561	571	Right-handed alpha
Helix 27	AC9	A	596	608	Right-handed alpha
Helix 28	AD1	A	625	645	Right-handed alpha
Helix 29	AD2	A	692	696	Right-handed 310
Helix 30	AD3	A	725	736	Right-handed alpha
Helix 31	AD4	A	764	771	Right-handed alpha
Helix 32	AD5	A	779	789	Right-handed alpha
Helix 33	AD6	A	792	803	Right-handed alpha
Helix 34	AD7	A	806	812	Right-handed alpha
Helix 35	AD8	A	818	826	Right-handed alpha
Helix 36	AD9	A	832	839	Right-handed alpha
Helix 37	AE1	A	881	889	Right-handed alpha
Helix 38	AE2	A	926	941	Right-handed alpha
Helix 39	AE3	A	963	973	Right-handed alpha
Helix 40	AE4	A	992	1000	Right-handed alpha
Helix 41	AE5	A	1000	1011	Right-handed alpha
Helix 42	AE6	A	1022	1039	Right-handed alpha
Helix 43	AE7	A	1042	1056	Right-handed alpha
Helix 44	AE8	B	13	17	Right-handed 310
Helix 45	AE9	B	18	22	Right-handed 310
Helix 46	AF1	B	26	38	Right-handed alpha
Helix 47	AF2	B	56	64	Right-handed alpha
Helix 48	AF3	B	75	85	Right-handed alpha
Helix 49	AF4	B	95	106	Right-handed alpha
Helix 50	AF5	B	107	110	Right-handed 310
Helix 51	AF6	B	111	116	Right-handed 310
Helix 52	AF7	B	117	134	Right-handed alpha
Helix 53	AF8	B	143	161	Right-handed alpha
Helix 54	AF9	B	173	191	Right-handed alpha
Helix 55	AG1	B	193	200	Right-handed alpha
Helix 56	AG2	B	200	227	Right-handed alpha
Helix 57	AG3	B	235	241	Right-handed alpha
Helix 58	AG4	B	253	282	Right-handed alpha
Helix 59	AG5	B	286	301	Right-handed alpha
Helix 60	AG6	B	307	313	Right-handed alpha
Helix 61	AG7	B	314	328	Right-handed alpha
Helix 62	AG8	B	361	366	Right-handed alpha
Helix 63	AG9	B	367	372	Right-handed alpha
Helix 64	AH1	B	379	385	Right-handed 310
Helix 65	AH2	B	399	403	Right-handed 310
Helix 66	AH3	B	406	424	Right-handed alpha
Helix 67	AH4	B	508	523	Right-handed alpha
Helix 68	AH5	B	534	537	Right-handed 310
Helix 69	AH6	B	561	571	Right-handed alpha
Helix 70	AH7	B	596	609	Right-handed alpha
Helix 71	AH8	B	625	645	Right-handed alpha
Helix 72	AH9	B	725	736	Right-handed alpha
Helix 73	AI1	B	764	771	Right-handed alpha
Helix 74	AI2	B	779	789	Right-handed alpha
Helix 75	AI3	B	792	802	Right-handed alpha
Helix 76	AI4	B	806	812	Right-handed alpha
Helix 77	AI5	B	818	826	Right-handed alpha
Helix 78	AI6	B	832	840	Right-handed alpha
Helix 79	AI7	B	881	890	Right-handed alpha
Helix 80	AI8	B	922	925	Right-handed 310
Helix 81	AI9	B	926	942	Right-handed alpha
Helix 82	AJ1	B	963	973	Right-handed alpha
Helix 83	AJ2	B	992	1000	Right-handed alpha
Helix 84	AJ3	B	1000	1011	Right-handed alpha
Helix 85	AJ4	B	1022	1039	Right-handed alpha
Helix 86	AJ5	B	1042	1056	Right-handed alpha

There are 20 sheets in PDB entry 9WUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	46	first strand
Strand 2	A	49	54	anti-parallel
Strand 3	A	356	360	parallel
Strand 4	A	333	338	anti-parallel
Strand 5	A	69	71	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	142	first strand
Strand 2	A	449	454	anti-parallel
Strand 3	A	425	428	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	348	350	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	439	first strand
Strand 2	A	443	445	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	532	first strand
Strand 2	A	499	504	parallel
Strand 3	A	545	551	parallel
Strand 4	A	580	587	parallel
Strand 5	A	612	613	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	532	first strand
Strand 2	A	499	504	parallel
Strand 3	A	545	551	parallel
Strand 4	A	580	587	parallel
Strand 5	A	618	621	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	665	first strand
Strand 2	B	743	748	anti-parallel
Strand 3	B	761	763	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	849	first strand
Strand 2	A	717	720	anti-parallel
Strand 3	A	895	901	anti-parallel
Strand 4	A	680	689	anti-parallel
Strand 5	A	699	705	anti-parallel
Strand 6	A	860	866	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	761	763	first strand
Strand 2	A	743	748	anti-parallel
Strand 3	B	660	665	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	869	871	first strand
Strand 2	A	878	880	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	977	982	first strand
Strand 2	A	949	955	parallel
Strand 3	A	917	922	parallel
Strand 4	A	1013	1019	parallel
Strand 5	A	1059	1064	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	46	first strand
Strand 2	B	49	54	anti-parallel
Strand 3	B	356	360	parallel
Strand 4	B	333	338	anti-parallel
Strand 5	B	69	71	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	449	454	anti-parallel
Strand 3	B	425	428	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	344	first strand
Strand 2	B	348	350	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	439	first strand
Strand 2	B	443	445	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	532	first strand
Strand 2	B	499	503	parallel
Strand 3	B	545	551	parallel
Strand 4	B	580	587	parallel
Strand 5	B	612	613	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	532	first strand
Strand 2	B	499	503	parallel
Strand 3	B	545	551	parallel
Strand 4	B	580	587	parallel
Strand 5	B	618	621	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	849	first strand
Strand 2	B	717	721	anti-parallel
Strand 3	B	895	901	anti-parallel
Strand 4	B	680	689	anti-parallel
Strand 5	B	699	705	anti-parallel
Strand 6	B	860	866	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	869	871	first strand
Strand 2	B	878	880	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	977	982	first strand
Strand 2	B	949	955	parallel
Strand 3	B	917	920	parallel
Strand 4	B	1013	1019	parallel
Strand 5	B	1059	1064	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WUP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WUP