Analysis of interatomic Contacts of Structural Units in PDB entry:
9WUV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WUV entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 9WUV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 174GLY 518
B
 ARG 531PRO 567
A
 GLY 174GLY 518
A
 ARG 531PRO 567
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 9WUV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
211 218Right-handed alpha
Helix 2
AA2
B
231 240Right-handed alpha
Helix 3
AA3
B
301 305Right-handed alpha
Helix 4
AA4
B
310 330Right-handed alpha
Helix 5
AA5
B
385 389Right-handed 310
Helix 6
AA6
B
390 395Right-handed alpha
Helix 7
AA7
B
408 422Right-handed alpha
Helix 8
AA8
B
440 444Right-handed 310
Helix 9
AA9
B
452 463Right-handed alpha
Helix 10
AB1
B
466 470Right-handed 310
Helix 11
AB2
B
472 486Right-handed alpha
Helix 12
AB3
B
487 492Right-handed 310
Helix 13
AB4
B
499 517Right-handed alpha
Helix 14
AB5
B
536 549Right-handed alpha
Helix 15
AB6
B
551 564Right-handed alpha
Helix 16
AB7
A
211 218Right-handed alpha
Helix 17
AB8
A
231 240Right-handed alpha
Helix 18
AB9
A
301 305Right-handed alpha
Helix 19
AC1
A
310 330Right-handed alpha
Helix 20
AC2
A
385 389Right-handed 310
Helix 21
AC3
A
390 395Right-handed alpha
Helix 22
AC4
A
408 422Right-handed alpha
Helix 23
AC5
A
440 444Right-handed 310
Helix 24
AC6
A
452 463Right-handed alpha
Helix 25
AC7
A
466 470Right-handed 310
Helix 26
AC8
A
472 486Right-handed alpha
Helix 27
AC9
A
487 492Right-handed 310
Helix 28
AD1
A
499 517Right-handed alpha
Helix 29
AD2
A
536 549Right-handed alpha
Helix 30
AD3
A
551 564Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9WUV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 177first strand
Strand 2
B
193 200anti-parallel
Strand 3
B
287 294anti-parallel
Strand 4
B
253 260anti-parallel
Strand 5
B
224 226parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
343 345anti-parallel
Strand 3
B
355 357anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 334first strand
Strand 2
B
364 365anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 374first strand
Strand 2
B
403 405anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
193 200anti-parallel
Strand 3
A
287 294anti-parallel
Strand 4
A
253 260anti-parallel
Strand 5
A
224 226parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
343 345anti-parallel
Strand 3
A
355 357anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
364 365anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 374first strand
Strand 2
A
403 405anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il