Analysis of interatomic Contacts of Structural Units in PDB entry:
9WV1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WV1 entry

There are 15 chains in PDB entry 9WV1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 21	ARG 194
B	LEU 22	GLN 415
C	ALA 29	LYS 241
D	LYS 12	ALA 79
E	LYS 12	HIS 71
F	ILE 11	GLN 73
G	LEU 9	GLN 75
H	LEU 9	GLN 75
I	LEU 13	LEU 72
J	MET 1	ALA 85
K	ILE 5	ALA 80
L	PRO 6	ALA 82
M	MET 1	GLN 85
N	ASP 2	GLU 77
O	PRO 3	MET 74

There are 61 helices in PDB entry 9WV1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	33	Right-handed alpha
Helix 2	AA2	A	43	47	Right-handed 310
Helix 3	AA3	A	58	68	Right-handed alpha
Helix 4	AA4	A	68	90	Right-handed alpha
Helix 5	AA5	A	119	148	Right-handed alpha
Helix 6	AA6	A	151	168	Right-handed alpha
Helix 7	AA7	A	171	193	Right-handed alpha
Helix 8	AA8	B	23	51	Right-handed alpha
Helix 9	AA9	B	75	84	Right-handed alpha
Helix 10	AB1	B	104	113	Right-handed alpha
Helix 11	AB2	B	126	137	Right-handed alpha
Helix 12	AB3	B	160	165	Right-handed alpha
Helix 13	AB4	B	170	185	Right-handed alpha
Helix 14	AB5	B	213	219	Right-handed alpha
Helix 15	AB6	B	220	225	Right-handed 310
Helix 16	AB7	B	230	242	Right-handed alpha
Helix 17	AB8	B	342	355	Right-handed alpha
Helix 18	AB9	B	409	415	Right-handed alpha
Helix 19	AC1	C	30	56	Right-handed alpha
Helix 20	AC2	C	56	76	Right-handed alpha
Helix 21	AC3	C	79	95	Right-handed alpha
Helix 22	AC4	C	96	97	Right-handed 310
Helix 23	AC5	C	98	102	Right-handed 310
Helix 24	AC6	C	105	120	Right-handed alpha
Helix 25	AC7	C	144	148	Right-handed 310
Helix 26	AC8	C	149	153	Right-handed 310
Helix 27	AC9	C	155	159	Right-handed 310
Helix 28	AD1	C	173	179	Right-handed alpha
Helix 29	AD2	C	187	191	Right-handed 310
Helix 30	AD3	C	194	198	Right-handed 310
Helix 31	AD4	C	200	205	Right-handed alpha
Helix 32	AD5	C	207	214	Right-handed alpha
Helix 33	AD6	C	215	218	Right-handed 310
Helix 34	AD7	C	223	225	Right-handed 310
Helix 35	AD8	C	226	240	Right-handed alpha
Helix 36	AD9	D	13	33	Right-handed alpha
Helix 37	AE1	D	42	79	Right-handed alpha
Helix 38	AE2	E	13	28	Right-handed alpha
Helix 39	AE3	E	42	71	Right-handed alpha
Helix 40	AE4	F	12	33	Right-handed alpha
Helix 41	AE5	F	42	67	Right-handed alpha
Helix 42	AE6	F	68	73	Right-handed alpha
Helix 43	AE7	G	10	33	Right-handed alpha
Helix 44	AE8	G	44	75	Right-handed alpha
Helix 45	AE9	H	10	34	Right-handed alpha
Helix 46	AF1	H	44	75	Right-handed alpha
Helix 47	AF2	I	14	23	Right-handed alpha
Helix 48	AF3	I	23	31	Right-handed alpha
Helix 49	AF4	I	53	72	Right-handed alpha
Helix 50	AF5	J	2	33	Right-handed alpha
Helix 51	AF6	J	42	85	Right-handed alpha
Helix 52	AF7	K	7	33	Right-handed alpha
Helix 53	AF8	K	42	80	Right-handed alpha
Helix 54	AF9	L	7	33	Right-handed alpha
Helix 55	AG1	L	42	82	Right-handed alpha
Helix 56	AG2	M	2	34	Right-handed alpha
Helix 57	AG3	M	44	85	Right-handed alpha
Helix 58	AG4	N	3	34	Right-handed alpha
Helix 59	AG5	N	44	77	Right-handed alpha
Helix 60	AG6	O	5	34	Right-handed alpha
Helix 61	AG7	O	44	72	Right-handed alpha

There are 5 sheets in PDB entry 9WV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	99	first strand
Strand 2	B	62	67	parallel
Strand 3	B	118	123	parallel
Strand 4	B	149	153	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	187	196	anti-parallel
Strand 3	B	396	407	anti-parallel
Strand 4	B	370	374	anti-parallel
Strand 5	B	248	254	anti-parallel
Strand 6	B	304	310	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	368	first strand
Strand 2	B	331	335	anti-parallel
Strand 3	B	312	316	anti-parallel
Strand 4	B	208	212	anti-parallel
Strand 5	B	383	385	anti-parallel
Strand 6	B	389	390	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	259	first strand
Strand 2	B	328	329	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	127	first strand
Strand 2	C	130	135	anti-parallel
Strand 3	C	163	168	anti-parallel
Strand 4	C	171	172	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WV1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WV1