Analysis of interatomic Contacts of Structural Units in PDB entry:
9WV2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WV2 entry

There are 11 chains in PDB entry 9WV2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 13	LEU 48
B	PRO 13	LEU 48
C	GLY 25	ALA 69
D	GLY 25	ALA 69
E	MET 1	GLY 55
F	MET 1	GLY 55
G	PHE 67	GLN 116
H	PHE 67	GLN 116
I	CYS 76	GLY 361
J	CYS 76	GLY 361
K	GLY 261	ALA 285

There are 20 helices in PDB entry 9WV2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	46	Right-handed alpha
Helix 2	AA2	B	14	47	Right-handed alpha
Helix 3	AA3	C	26	37	Right-handed alpha
Helix 4	AA4	C	40	61	Right-handed alpha
Helix 5	AA5	D	26	35	Right-handed alpha
Helix 6	AA6	D	40	62	Right-handed alpha
Helix 7	AA7	E	5	25	Right-handed alpha
Helix 8	AA8	E	27	39	Right-handed alpha
Helix 9	AA9	E	48	53	Right-handed 310
Helix 10	AB1	F	7	25	Right-handed alpha
Helix 11	AB2	F	27	38	Right-handed alpha
Helix 12	AB3	F	48	53	Right-handed 310
Helix 13	AB4	G	68	96	Right-handed alpha
Helix 14	AB5	G	96	116	Right-handed alpha
Helix 15	AB6	H	68	96	Right-handed alpha
Helix 16	AB7	H	96	115	Right-handed alpha
Helix 17	AB8	I	82	89	Right-handed alpha
Helix 18	AB9	I	90	93	Right-handed 310
Helix 19	AC1	J	82	92	Right-handed alpha
Helix 20	AC2	K	269	274	Right-handed alpha

There are 2 sheets in PDB entry 9WV2. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	101	110	first strand
Strand 2	I	113	121	anti-parallel
Strand 3	I	128	136	anti-parallel
Strand 4	I	149	154	anti-parallel
Strand 5	I	161	166	anti-parallel
Strand 6	I	174	180	anti-parallel
Strand 7	I	185	192	anti-parallel
Strand 8	I	202	205	anti-parallel
Strand 9	I	217	226	anti-parallel
Strand 10	I	229	236	anti-parallel
Strand 11	I	247	256	anti-parallel
Strand 12	I	259	263	anti-parallel
Strand 13	I	272	276	anti-parallel
Strand 14	I	282	288	anti-parallel
Strand 15	I	299	307	anti-parallel
Strand 16	I	312	319	anti-parallel
Strand 17	I	323	332	anti-parallel
Strand 18	I	337	346	anti-parallel
Strand 19	I	351	358	anti-parallel
Strand 20	I	101	110	parallel

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There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	110	first strand
Strand 2	J	113	121	anti-parallel
Strand 3	J	128	136	anti-parallel
Strand 4	J	149	154	anti-parallel
Strand 5	J	160	166	anti-parallel
Strand 6	J	172	180	anti-parallel
Strand 7	J	185	195	anti-parallel
Strand 8	J	200	205	anti-parallel
Strand 9	J	216	224	anti-parallel
Strand 10	J	230	238	anti-parallel
Strand 11	J	246	256	anti-parallel
Strand 12	J	259	263	anti-parallel
Strand 13	J	273	277	anti-parallel
Strand 14	J	282	291	anti-parallel
Strand 15	J	296	307	anti-parallel
Strand 16	J	312	319	anti-parallel
Strand 17	J	323	331	anti-parallel
Strand 18	J	337	346	anti-parallel
Strand 19	J	351	360	anti-parallel
Strand 20	J	100	110	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WV2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WV2