Analysis of interatomic Contacts of Structural Units in PDB entry:
9WV3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WV3 entry

There are 12 chains in PDB entry 9WV3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 13	LEU 48
B	PRO 13	LEU 48
C	GLY 25	ALA 69
D	GLY 25	ALA 69
E	SER 5	GLY 55
F	SER 5	GLY 55
G	ASP 68	ARG 117
H	ASP 68	ARG 117
I	CYS 76	GLY 361
J	CYS 76	GLY 361
K	GLY 261	ALA 285
L	GLY 261	ALA 285

There are 22 helices in PDB entry 9WV3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	18	Right-handed alpha
Helix 2	AA2	A	20	48	Right-handed alpha
Helix 3	AA3	B	14	18	Right-handed alpha
Helix 4	AA4	B	20	48	Right-handed alpha
Helix 5	AA5	C	26	35	Right-handed alpha
Helix 6	AA6	C	40	60	Right-handed alpha
Helix 7	AA7	D	26	35	Right-handed alpha
Helix 8	AA8	D	40	60	Right-handed alpha
Helix 9	AA9	E	6	26	Right-handed alpha
Helix 10	AB1	E	27	39	Right-handed alpha
Helix 11	AB2	E	48	53	Right-handed 310
Helix 12	AB3	F	6	26	Right-handed alpha
Helix 13	AB4	F	27	39	Right-handed alpha
Helix 14	AB5	F	48	53	Right-handed 310
Helix 15	AB6	G	72	96	Right-handed alpha
Helix 16	AB7	G	96	115	Right-handed alpha
Helix 17	AB8	H	72	96	Right-handed alpha
Helix 18	AB9	H	96	115	Right-handed alpha
Helix 19	AC1	I	87	92	Right-handed alpha
Helix 20	AC2	J	87	92	Right-handed alpha
Helix 21	AC3	K	263	274	Right-handed alpha
Helix 22	AC4	L	263	274	Right-handed alpha

There are 2 sheets in PDB entry 9WV3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 23 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	172	180	first strand
Strand 2	I	185	190	anti-parallel
Strand 3	I	199	205	anti-parallel
Strand 4	I	172	180	first strand
Strand 5	I	161	166	anti-parallel
Strand 6	I	147	154	anti-parallel
Strand 7	I	128	139	anti-parallel
Strand 8	I	113	121	anti-parallel
Strand 9	I	100	108	anti-parallel
Strand 10	I	351	359	parallel
Strand 11	I	338	346	anti-parallel
Strand 12	I	323	331	anti-parallel
Strand 13	I	312	319	anti-parallel
Strand 14	I	296	307	anti-parallel
Strand 15	I	282	291	anti-parallel
Strand 16	I	269	277	anti-parallel
Strand 17	I	259	264	anti-parallel
Strand 18	I	243	255	anti-parallel
Strand 19	I	229	240	anti-parallel
Strand 20	I	215	226	anti-parallel
Strand 21	I	199	205	anti-parallel
Strand 22	I	193	195	anti-parallel
Strand 23	I	199	205	anti-parallel

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There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	108	first strand
Strand 2	J	113	121	anti-parallel
Strand 3	J	128	139	anti-parallel
Strand 4	J	147	154	anti-parallel
Strand 5	J	161	166	anti-parallel
Strand 6	J	172	180	anti-parallel
Strand 7	J	185	195	anti-parallel
Strand 8	J	199	205	anti-parallel
Strand 9	J	215	226	anti-parallel
Strand 10	J	229	240	anti-parallel
Strand 11	J	243	255	anti-parallel
Strand 12	J	259	264	anti-parallel
Strand 13	J	269	277	anti-parallel
Strand 14	J	282	291	anti-parallel
Strand 15	J	296	307	anti-parallel
Strand 16	J	312	319	anti-parallel
Strand 17	J	323	331	anti-parallel
Strand 18	J	338	346	anti-parallel
Strand 19	J	351	359	anti-parallel
Strand 20	J	100	108	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WV3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WV3