Analysis of interatomic Contacts of Structural Units in PDB entry:
9WVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WVI entry

There are 4 chains in PDB entry 9WVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 932ASP 1011
B
 HIS 931ASP 1011
C
 HIS 932TRP 1010
D
 HIS 932ASP 1011
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 9WVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
956 973Right-handed alpha
Helix 2
AA2
A
992 997Right-handed alpha
Helix 3
AA3
B
956 973Right-handed alpha
Helix 4
AA4
B
992 997Right-handed alpha
Helix 5
AA5
C
956 973Right-handed alpha
Helix 6
AA6
C
992 997Right-handed alpha
Helix 7
AA7
D
956 973Right-handed alpha
Helix 8
AA8
D
992 997Right-handed alpha
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There are 2 sheets in PDB entry 9WVI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
985 986first strand
Strand 2
A
975 982anti-parallel
Strand 3
A
1002 1011anti-parallel
Strand 4
A
933 939parallel
Strand 5
A
942 948anti-parallel
Strand 6
B
985 987parallel
Strand 7
B
975 982anti-parallel
Strand 8
B
1001 1011anti-parallel
Strand 9
B
932 939parallel
Strand 10
B
942 949anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
942 948first strand
Strand 2
C
933 939anti-parallel
Strand 3
C
1001 1009parallel
Strand 4
C
977 982anti-parallel
Strand 5
C
985 987anti-parallel
Strand 6
D
942 948parallel
Strand 7
D
933 939anti-parallel
Strand 8
D
1002 1010parallel
Strand 9
D
976 982anti-parallel
Strand 10
D
985 986anti-parallel
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