Analysis of interatomic Contacts of Structural Units in PDB entry:
9WVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WVK entry

There are 4 chains in PDB entry 9WVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2701ILE 2713
A
 PRO 2716SER 2803
B
 ASN 2702ILE 2713
B
 PRO 2716GLY 2801
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 9WVK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2767 2769Right-handed 310
Helix 2
AA2
A
2785 2800Right-handed alpha
Helix 3
AA3
B
2767 2769Right-handed 310
Helix 4
AA4
B
2785 2801Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9WVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2749 2750first strand
Strand 2
A
2735 2741anti-parallel
Strand 3
A
2763 2766anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2749 2750first strand
Strand 2
A
2735 2741anti-parallel
Strand 3
A
2724 2730anti-parallel
Strand 4
A
2710 2713anti-parallel
Strand 5
A
2771 2776anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2752 2755first strand
Strand 2
A
2758 2761anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2749 2750first strand
Strand 2
B
2735 2741anti-parallel
Strand 3
B
2763 2766anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2749 2750first strand
Strand 2
B
2735 2741anti-parallel
Strand 3
B
2724 2730anti-parallel
Strand 4
B
2710 2713anti-parallel
Strand 5
B
2771 2776anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2752 2755first strand
Strand 2
B
2758 2761anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il