Analysis of interatomic Contacts of Structural Units in PDB entry:
9WVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WVY entry

There is 1 chain in PDB entry 9WVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 11SER 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9WVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 34Right-handed alpha
Helix 2
AA2
A
40 54Right-handed alpha
Helix 3
AA3
A
64 79Right-handed alpha
Helix 4
AA4
A
95 98Right-handed 310
Helix 5
AA5
A
99 105Right-handed alpha
Helix 6
AA6
A
122 134Right-handed alpha
Helix 7
AA7
A
143 146Right-handed 310
Helix 8
AA8
A
149 161Right-handed alpha
Helix 9
AA9
A
210 222Right-handed alpha
Helix 10
AB1
A
261 273Right-handed alpha
Helix 11
AB2
A
274 296Right-handed alpha
Helix 12
AB3
A
323 334Right-handed alpha
Helix 13
AB4
A
345 353Right-handed 310
Helix 14
AB5
A
364 372Right-handed alpha
Helix 15
AB6
A
383 399Right-handed alpha
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There are 3 sheets in PDB entry 9WVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
204 208anti-parallel
Strand 3
A
187 191anti-parallel
Strand 4
A
163 167parallel
Strand 5
A
137 141parallel
Strand 6
A
87 91parallel
Strand 7
A
108 112parallel
Strand 8
A
358 359parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
179 180anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
313 317anti-parallel
Strand 3
A
373 377anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il