Analysis of interatomic Contacts of Structural Units in PDB entry:
9WW9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WW9 entry

There are 14 chains in PDB entry 9WW9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
g	ALA 2	ASN 89
a	ALA 2	ASN 89
c	ALA 2	ASN 89
b	ALA 2	ASN 89
e	ALA 2	ASN 89
d	ALA 2	ASN 89
f	ALA 2	ASN 89
F	SER 2	ALA 365
E	SER 2	ALA 365
C	SER 2	ALA 365
D	SER 2	ALA 365
B	SER 2	ALA 365
G	SER 2	ALA 365
A	SER 2	ALA 365

There are 89 helices in PDB entry 9WW9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	g	22	35	Right-handed alpha
Helix 2	AA2	g	37	39	Right-handed 310
Helix 3	AA3	a	22	35	Right-handed alpha
Helix 4	AA4	a	37	39	Right-handed 310
Helix 5	AA5	c	17	21	Right-handed 310
Helix 6	AA6	c	22	35	Right-handed alpha
Helix 7	AA7	c	37	39	Right-handed 310
Helix 8	AA8	b	22	35	Right-handed alpha
Helix 9	AA9	b	37	39	Right-handed 310
Helix 10	AB1	e	22	36	Right-handed alpha
Helix 11	AB2	d	17	21	Right-handed 310
Helix 12	AB3	d	22	36	Right-handed alpha
Helix 13	AB4	d	37	39	Right-handed 310
Helix 14	AB5	f	22	36	Right-handed alpha
Helix 15	AB6	f	37	39	Right-handed 310
Helix 16	AB7	F	19	24	Right-handed 310
Helix 17	AB8	F	28	39	Right-handed alpha
Helix 18	AB9	F	46	55	Right-handed alpha
Helix 19	AC1	F	106	110	Right-handed 310
Helix 20	AC2	F	116	146	Right-handed alpha
Helix 21	AC3	F	168	172	Right-handed 310
Helix 22	AC4	F	175	185	Right-handed alpha
Helix 23	AC5	F	197	208	Right-handed alpha
Helix 24	AC6	F	217	221	Right-handed 310
Helix 25	AC7	F	258	264	Right-handed alpha
Helix 26	AC8	F	296	304	Right-handed 310
Helix 27	AC9	E	3	7	Right-handed 310
Helix 28	AD1	E	28	39	Right-handed alpha
Helix 29	AD2	E	46	55	Right-handed alpha
Helix 30	AD3	E	106	111	Right-handed 310
Helix 31	AD4	E	116	146	Right-handed alpha
Helix 32	AD5	E	168	172	Right-handed 310
Helix 33	AD6	E	174	186	Right-handed alpha
Helix 34	AD7	E	197	208	Right-handed alpha
Helix 35	AD8	E	217	222	Right-handed 310
Helix 36	AD9	E	258	264	Right-handed alpha
Helix 37	AE1	E	299	304	Right-handed 310
Helix 38	AE2	C	15	19	Right-handed 310
Helix 39	AE3	C	28	39	Right-handed alpha
Helix 40	AE4	C	46	55	Right-handed alpha
Helix 41	AE5	C	106	111	Right-handed 310
Helix 42	AE6	C	116	147	Right-handed alpha
Helix 43	AE7	C	169	173	Right-handed 310
Helix 44	AE8	C	174	186	Right-handed alpha
Helix 45	AE9	C	197	208	Right-handed alpha
Helix 46	AF1	C	218	222	Right-handed 310
Helix 47	AF2	C	258	264	Right-handed alpha
Helix 48	AF3	C	359	363	Right-handed 310
Helix 49	AF4	D	15	24	Right-handed 310
Helix 50	AF5	D	28	39	Right-handed alpha
Helix 51	AF6	D	46	54	Right-handed alpha
Helix 52	AF7	D	106	110	Right-handed 310
Helix 53	AF8	D	116	147	Right-handed alpha
Helix 54	AF9	D	168	172	Right-handed 310
Helix 55	AG1	D	174	186	Right-handed alpha
Helix 56	AG2	D	197	208	Right-handed alpha
Helix 57	AG3	D	217	222	Right-handed 310
Helix 58	AG4	D	299	304	Right-handed 310
Helix 59	AG5	B	28	39	Right-handed alpha
Helix 60	AG6	B	46	55	Right-handed alpha
Helix 61	AG7	B	106	111	Right-handed 310
Helix 62	AG8	B	116	147	Right-handed alpha
Helix 63	AG9	B	169	174	Right-handed 310
Helix 64	AH1	B	178	186	Right-handed alpha
Helix 65	AH2	B	197	208	Right-handed alpha
Helix 66	AH3	B	299	304	Right-handed 310
Helix 67	AH4	B	359	363	Right-handed 310
Helix 68	AH5	G	18	23	Right-handed 310
Helix 69	AH6	G	28	39	Right-handed alpha
Helix 70	AH7	G	46	55	Right-handed alpha
Helix 71	AH8	G	106	110	Right-handed 310
Helix 72	AH9	G	116	147	Right-handed alpha
Helix 73	AI1	G	169	173	Right-handed 310
Helix 74	AI2	G	174	186	Right-handed alpha
Helix 75	AI3	G	197	208	Right-handed alpha
Helix 76	AI4	G	218	222	Right-handed 310
Helix 77	AI5	G	258	264	Right-handed alpha
Helix 78	AI6	G	299	304	Right-handed 310
Helix 79	AI7	G	359	363	Right-handed 310
Helix 80	AI8	A	3	7	Right-handed 310
Helix 81	AI9	A	15	24	Right-handed 310
Helix 82	AJ1	A	28	40	Right-handed alpha
Helix 83	AJ2	A	46	55	Right-handed alpha
Helix 84	AJ3	A	106	111	Right-handed 310
Helix 85	AJ4	A	116	146	Right-handed alpha
Helix 86	AJ5	A	171	174	Right-handed 310
Helix 87	AJ6	A	175	186	Right-handed alpha
Helix 88	AJ7	A	197	209	Right-handed alpha
Helix 89	AJ8	A	258	264	Right-handed alpha

There are 37 sheets in PDB entry 9WW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	10	13	first strand
Strand 2	g	41	48	parallel
Strand 3	g	51	56	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	59	63	first strand
Strand 2	g	70	77	anti-parallel
Strand 3	g	82	87	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	10	13	first strand
Strand 2	a	41	46	parallel
Strand 3	a	51	56	anti-parallel
Strand 4	b	59	63	anti-parallel
Strand 5	b	70	77	anti-parallel
Strand 6	b	82	87	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	82	87	first strand
Strand 2	a	70	77	anti-parallel
Strand 3	a	59	63	anti-parallel
Strand 4	c	51	56	anti-parallel
Strand 5	c	41	46	anti-parallel
Strand 6	c	10	13	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	82	87	first strand
Strand 2	c	70	77	anti-parallel
Strand 3	c	59	63	anti-parallel
Strand 4	b	51	56	anti-parallel
Strand 5	b	41	48	anti-parallel
Strand 6	b	10	13	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	10	13	first strand
Strand 2	e	41	48	parallel
Strand 3	e	51	56	anti-parallel
Strand 4	f	59	63	anti-parallel
Strand 5	f	70	77	anti-parallel
Strand 6	f	82	87	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	82	87	first strand
Strand 2	e	70	77	anti-parallel
Strand 3	e	59	63	anti-parallel
Strand 4	d	51	56	anti-parallel
Strand 5	d	41	48	anti-parallel
Strand 6	d	10	13	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	82	87	first strand
Strand 2	d	70	77	anti-parallel
Strand 3	d	59	63	anti-parallel
Strand 4	f	51	56	anti-parallel
Strand 5	f	41	48	anti-parallel
Strand 6	f	10	13	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	G	61	66	parallel
Strand 3	G	89	93	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	93	first strand
Strand 2	F	61	66	anti-parallel
Strand 3	E	11	12	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	105	first strand
Strand 2	F	310	324	anti-parallel
Strand 3	F	251	256	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	105	first strand
Strand 2	F	310	324	anti-parallel
Strand 3	F	283	292	anti-parallel
Strand 4	F	270	276	anti-parallel
Strand 5	F	266	267	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	161	first strand
Strand 2	F	164	167	anti-parallel
Strand 3	F	337	343	parallel
Strand 4	F	239	247	anti-parallel
Strand 5	F	192	196	anti-parallel
Strand 6	F	226	229	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	353	357	first strand
Strand 2	E	353	357	parallel
Strand 3	D	353	357	parallel
Strand 4	C	353	357	parallel
Strand 5	B	353	357	parallel
Strand 6	G	353	357	parallel
Strand 7	F	353	357	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	93	first strand
Strand 2	E	61	66	anti-parallel
Strand 3	D	11	12	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	105	first strand
Strand 2	E	310	324	anti-parallel
Strand 3	E	251	256	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	105	first strand
Strand 2	E	310	324	anti-parallel
Strand 3	E	283	292	anti-parallel
Strand 4	E	270	276	anti-parallel
Strand 5	E	266	267	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	161	first strand
Strand 2	E	164	167	anti-parallel
Strand 3	E	337	343	parallel
Strand 4	E	239	246	anti-parallel
Strand 5	E	192	196	anti-parallel
Strand 6	E	225	229	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	D	61	66	parallel
Strand 3	D	89	93	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	93	first strand
Strand 2	C	61	66	anti-parallel
Strand 3	B	11	12	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	105	first strand
Strand 2	C	310	324	anti-parallel
Strand 3	C	251	256	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	105	first strand
Strand 2	C	310	324	anti-parallel
Strand 3	C	283	292	anti-parallel
Strand 4	C	270	276	anti-parallel
Strand 5	C	266	267	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	161	first strand
Strand 2	C	164	167	anti-parallel
Strand 3	C	337	343	parallel
Strand 4	C	239	246	anti-parallel
Strand 5	C	193	196	anti-parallel
Strand 6	C	226	229	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	105	first strand
Strand 2	D	310	324	anti-parallel
Strand 3	D	251	256	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	105	first strand
Strand 2	D	310	324	anti-parallel
Strand 3	D	283	292	anti-parallel
Strand 4	D	270	276	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	164	167	anti-parallel
Strand 3	D	337	343	parallel
Strand 4	D	239	246	anti-parallel
Strand 5	D	192	196	anti-parallel
Strand 6	D	225	229	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	93	first strand
Strand 2	B	61	66	anti-parallel
Strand 3	G	11	12	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	105	first strand
Strand 2	B	309	324	anti-parallel
Strand 3	B	251	256	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	105	first strand
Strand 2	B	309	324	anti-parallel
Strand 3	B	283	293	anti-parallel
Strand 4	B	270	276	anti-parallel
Strand 5	B	266	267	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	164	167	anti-parallel
Strand 3	B	337	343	parallel
Strand 4	B	239	247	anti-parallel
Strand 5	B	192	196	anti-parallel
Strand 6	B	225	229	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	105	first strand
Strand 2	G	309	324	anti-parallel
Strand 3	G	251	256	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	105	first strand
Strand 2	G	309	324	anti-parallel
Strand 3	G	283	293	anti-parallel
Strand 4	G	270	276	anti-parallel
Strand 5	G	266	267	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	160	161	first strand
Strand 2	G	164	167	anti-parallel
Strand 3	G	337	343	parallel
Strand 4	G	239	247	anti-parallel
Strand 5	G	192	196	anti-parallel
Strand 6	G	226	229	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	66	first strand
Strand 2	A	89	93	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	105	first strand
Strand 2	A	309	324	anti-parallel
Strand 3	A	251	256	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	105	first strand
Strand 2	A	309	324	anti-parallel
Strand 3	A	283	293	anti-parallel
Strand 4	A	270	276	anti-parallel
Strand 5	A	266	267	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	161	first strand
Strand 2	A	164	167	anti-parallel
Strand 3	A	337	343	parallel
Strand 4	A	239	246	anti-parallel
Strand 5	A	192	196	anti-parallel
Strand 6	A	225	229	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WW9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WW9