Analysis of interatomic Contacts of Structural Units in PDB entry:
9WWA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WWA entry

There are 7 chains in PDB entry 9WWA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
h	MET 1	CYS 186
N	CYS 6	ALA 213
B	MET 1	GLY 216
A	GLU 7	ARG 429
M	ILE 8	ARG 429
I	MET 1	THR 440
K	MET 1	THR 440

There are 70 helices in PDB entry 9WWA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	h	12	28	Right-handed alpha
Helix 2	AA2	h	107	111	Right-handed alpha
Helix 3	AA3	h	118	133	Right-handed alpha
Helix 4	AA4	h	149	154	Right-handed alpha
Helix 5	AA5	N	53	56	Right-handed 310
Helix 6	AA6	N	57	63	Right-handed alpha
Helix 7	AA7	N	94	98	Right-handed 310
Helix 8	AA8	N	117	125	Right-handed alpha
Helix 9	AA9	N	126	133	Right-handed alpha
Helix 10	AB1	N	193	195	Right-handed 310
Helix 11	AB2	B	53	57	Right-handed 310
Helix 12	AB3	B	58	62	Right-handed 310
Helix 13	AB4	B	94	98	Right-handed 310
Helix 14	AB5	B	117	125	Right-handed alpha
Helix 15	AB6	B	127	133	Right-handed alpha
Helix 16	AB7	B	193	195	Right-handed 310
Helix 17	AB8	A	17	36	Right-handed alpha
Helix 18	AB9	A	46	59	Right-handed alpha
Helix 19	AC1	A	60	70	Right-handed alpha
Helix 20	AC2	A	76	89	Right-handed alpha
Helix 21	AC3	A	90	92	Right-handed 310
Helix 22	AC4	A	105	119	Right-handed alpha
Helix 23	AC5	A	121	136	Right-handed alpha
Helix 24	AC6	A	167	169	Right-handed 310
Helix 25	AC7	A	248	250	Right-handed 310
Helix 26	AC8	A	251	272	Right-handed alpha
Helix 27	AC9	A	289	293	Right-handed 310
Helix 28	AD1	A	297	302	Right-handed alpha
Helix 29	AD2	A	356	380	Right-handed alpha
Helix 30	AD3	A	404	428	Right-handed alpha
Helix 31	AD4	M	17	36	Right-handed alpha
Helix 32	AD5	M	46	59	Right-handed alpha
Helix 33	AD6	M	60	70	Right-handed alpha
Helix 34	AD7	M	76	89	Right-handed alpha
Helix 35	AD8	M	90	92	Right-handed 310
Helix 36	AD9	M	107	119	Right-handed alpha
Helix 37	AE1	M	121	137	Right-handed alpha
Helix 38	AE2	M	251	272	Right-handed alpha
Helix 39	AE3	M	289	293	Right-handed 310
Helix 40	AE4	M	297	302	Right-handed alpha
Helix 41	AE5	M	356	380	Right-handed alpha
Helix 42	AE6	M	406	428	Right-handed alpha
Helix 43	AE7	I	3	11	Right-handed alpha
Helix 44	AE8	I	28	33	Right-handed 310
Helix 45	AE9	I	39	43	Right-handed 310
Helix 46	AF1	I	48	53	Right-handed alpha
Helix 47	AF2	I	85	87	Right-handed 310
Helix 48	AF3	I	114	142	Right-handed alpha
Helix 49	AF4	I	259	265	Right-handed 310
Helix 50	AF5	I	319	323	Right-handed 310
Helix 51	AF6	I	343	350	Right-handed alpha
Helix 52	AF7	I	351	353	Right-handed 310
Helix 53	AF8	I	354	372	Right-handed alpha
Helix 54	AF9	I	380	388	Right-handed alpha
Helix 55	AG1	I	397	401	Right-handed 310
Helix 56	AG2	I	404	420	Right-handed alpha
Helix 57	AG3	K	3	11	Right-handed alpha
Helix 58	AG4	K	22	26	Right-handed 310
Helix 59	AG5	K	28	32	Right-handed 310
Helix 60	AG6	K	39	43	Right-handed 310
Helix 61	AG7	K	48	54	Right-handed alpha
Helix 62	AG8	K	59	64	Right-handed 310
Helix 63	AG9	K	115	142	Right-handed alpha
Helix 64	AH1	K	319	323	Right-handed 310
Helix 65	AH2	K	343	350	Right-handed alpha
Helix 66	AH3	K	351	353	Right-handed 310
Helix 67	AH4	K	354	372	Right-handed alpha
Helix 68	AH5	K	379	388	Right-handed alpha
Helix 69	AH6	K	389	394	Right-handed alpha
Helix 70	AH7	K	404	421	Right-handed alpha

There are 28 sheets in PDB entry 9WWA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	33	37	first strand
Strand 2	h	74	79	parallel
Strand 3	h	94	106	anti-parallel
Strand 4	h	84	86	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	33	37	first strand
Strand 2	h	74	79	parallel
Strand 3	h	94	106	anti-parallel
Strand 4	h	171	183	anti-parallel
Strand 5	h	140	147	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	39	45	first strand
Strand 2	h	48	56	anti-parallel
Strand 3	h	62	64	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	69	71	first strand
Strand 2	N	27	34	anti-parallel
Strand 3	N	136	142	anti-parallel
Strand 4	N	147	151	anti-parallel
Strand 5	N	162	163	first strand

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	159	160	first strand
Strand 2	N	147	151	anti-parallel
Strand 3	N	136	142	anti-parallel
Strand 4	N	197	200	first strand

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	76	79	first strand
Strand 2	N	107	114	anti-parallel
Strand 3	N	182	189	anti-parallel
Strand 4	N	165	169	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	85	88	first strand
Strand 2	N	100	104	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	27	34	anti-parallel
Strand 3	B	136	142	anti-parallel
Strand 4	B	147	151	anti-parallel
Strand 5	B	162	163	first strand

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	147	151	anti-parallel
Strand 3	B	136	142	anti-parallel
Strand 4	B	197	200	first strand

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	88	first strand
Strand 2	B	100	104	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	114	first strand
Strand 2	B	182	189	anti-parallel
Strand 3	B	165	169	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	165	first strand
Strand 2	A	140	145	anti-parallel
Strand 3	A	228	230	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	174	first strand
Strand 2	A	181	187	anti-parallel
Strand 3	A	193	196	anti-parallel
Strand 4	A	200	205	anti-parallel
Strand 5	A	214	220	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	351	353	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	335	first strand
Strand 2	M	276	280	parallel
Strand 3	M	351	353	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	160	165	first strand
Strand 2	M	140	145	anti-parallel
Strand 3	M	228	230	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	169	174	first strand
Strand 2	M	181	187	anti-parallel
Strand 3	M	192	196	anti-parallel
Strand 4	M	200	205	anti-parallel
Strand 5	M	217	220	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	235	237	first strand
Strand 2	M	240	244	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	78	79	first strand
Strand 2	I	92	94	anti-parallel
Strand 3	I	110	112	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	83	84	first strand
Strand 2	I	88	89	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	150	153	first strand
Strand 2	I	334	341	anti-parallel
Strand 3	I	184	196	anti-parallel
Strand 4	I	238	240	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	229	233	first strand
Strand 2	I	184	196	anti-parallel
Strand 3	I	266	267	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	216	222	first strand
Strand 2	I	200	208	anti-parallel
Strand 3	I	252	257	anti-parallel
Strand 4	I	170	178	anti-parallel
Strand 5	I	298	306	anti-parallel
Strand 6	I	324	325	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	72	73	first strand
Strand 2	K	98	99	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	78	80	first strand
Strand 2	K	91	93	anti-parallel
Strand 3	K	111	112	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	150	153	first strand
Strand 2	K	334	341	anti-parallel
Strand 3	K	184	196	anti-parallel
Strand 4	K	228	233	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	150	153	first strand
Strand 2	K	334	341	anti-parallel
Strand 3	K	184	196	anti-parallel
Strand 4	K	266	267	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	216	222	first strand
Strand 2	K	200	208	anti-parallel
Strand 3	K	252	257	anti-parallel
Strand 4	K	170	176	anti-parallel
Strand 5	K	300	306	anti-parallel
Strand 6	K	324	325	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WWA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WWA