Analysis of interatomic Contacts of Structural Units in PDB entry:
9WWB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WWB entry

There are 3 chains in PDB entry 9WWB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 PRO 7ALA 213
J
 ILE 2GLY 215
P
 MET 1GLY 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9WWB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
53 63Right-handed alpha
Helix 2
AA2
E
117 127Right-handed alpha
Helix 3
AA3
E
127 133Right-handed alpha
Helix 4
AA4
E
205 209Right-handed 310
Helix 5
AA5
J
46 50Right-handed 310
Helix 6
AA6
J
53 57Right-handed 310
Helix 7
AA7
J
117 125Right-handed alpha
Helix 8
AA8
J
126 133Right-handed alpha
Helix 9
AA9
P
53 56Right-handed 310
Helix 10
AB1
P
57 62Right-handed alpha
Helix 11
AB2
P
117 129Right-handed alpha
Helix 12
AB3
P
130 132Right-handed 310
Helix 13
AB4
P
205 210Right-handed alpha
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There are 11 sheets in PDB entry 9WWB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
69 71first strand
Strand 2
E
27 34anti-parallel
Strand 3
E
136 142anti-parallel
Strand 4
E
147 151anti-parallel
Strand 5
E
162 163first strand
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
159 160first strand
Strand 2
E
147 151anti-parallel
Strand 3
E
136 142anti-parallel
Strand 4
E
197 200first strand
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
85 88first strand
Strand 2
E
100 104anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
107 113first strand
Strand 2
E
183 189anti-parallel
Strand 3
E
165 169anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
69 71first strand
Strand 2
J
27 34anti-parallel
Strand 3
J
136 142anti-parallel
Strand 4
J
147 151anti-parallel
Strand 5
J
162 163first strand
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
159 160first strand
Strand 2
J
147 151anti-parallel
Strand 3
J
136 142anti-parallel
Strand 4
J
197 200first strand
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
85 88first strand
Strand 2
J
100 104anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
107 114first strand
Strand 2
J
182 189anti-parallel
Strand 3
J
165 169anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
70 71first strand
Strand 2
P
27 33anti-parallel
Strand 3
P
137 142anti-parallel
Strand 4
P
147 151anti-parallel
Strand 5
P
159 160anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
76 80first strand
Strand 2
P
107 113anti-parallel
Strand 3
P
183 189anti-parallel
Strand 4
P
162 169anti-parallel
Strand 5
P
137 142anti-parallel
Strand 6
P
147 151anti-parallel
Strand 7
P
197 200anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
85 88first strand
Strand 2
P
100 104anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il