Analysis of interatomic Contacts of Structural Units in PDB entry:
9WWC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WWC entry

There are 3 chains in PDB entry 9WWC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 2	GLU 834
S	GLN 3	GLY 273
A	GLN 3	GLN 270

There are 27 helices in PDB entry 9WWC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	97	103	Right-handed alpha
Helix 2	AA2	B	156	164	Right-handed alpha
Helix 3	AA3	B	194	198	Right-handed 310
Helix 4	AA4	B	216	224	Right-handed alpha
Helix 5	AA5	B	230	234	Right-handed alpha
Helix 6	AA6	B	276	283	Right-handed alpha
Helix 7	AA7	B	303	307	Right-handed 310
Helix 8	AA8	B	483	487	Right-handed 310
Helix 9	AA9	B	502	507	Right-handed alpha
Helix 10	AB1	B	519	531	Right-handed alpha
Helix 11	AB2	B	565	570	Right-handed alpha
Helix 12	AB3	B	583	595	Right-handed alpha
Helix 13	AB4	B	611	616	Right-handed alpha
Helix 14	AB5	B	631	633	Right-handed 310
Helix 15	AB6	B	669	674	Right-handed alpha
Helix 16	AB7	B	700	706	Right-handed alpha
Helix 17	AB8	B	749	751	Right-handed 310
Helix 18	AB9	B	752	758	Right-handed alpha
Helix 19	AC1	S	19	23	Right-handed 310
Helix 20	AC2	S	71	76	Right-handed alpha
Helix 21	AC3	S	182	186	Right-handed 310
Helix 22	AC4	S	205	212	Right-handed alpha
Helix 23	AC5	S	213	218	Right-handed 310
Helix 24	AC6	A	19	23	Right-handed 310
Helix 25	AC7	A	71	76	Right-handed alpha
Helix 26	AC8	A	205	212	Right-handed alpha
Helix 27	AC9	A	213	215	Right-handed 310

There are 34 sheets in PDB entry 9WWC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	123	first strand
Strand 2	B	4	10	anti-parallel
Strand 3	B	171	178	anti-parallel
Strand 4	B	186	193	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	28	34	anti-parallel
Strand 3	B	90	96	anti-parallel
Strand 4	B	38	39	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	28	34	anti-parallel
Strand 3	B	90	96	anti-parallel
Strand 4	B	58	61	anti-parallel
Strand 5	B	67	71	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	47	50	anti-parallel
Strand 3	B	107	108	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	149	first strand
Strand 2	B	132	137	anti-parallel
Strand 3	B	810	819	anti-parallel
Strand 4	B	803	805	anti-parallel
Strand 5	B	626	629	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	149	first strand
Strand 2	B	132	137	anti-parallel
Strand 3	B	810	819	anti-parallel
Strand 4	B	824	832	anti-parallel
Strand 5	B	784	793	anti-parallel
Strand 6	B	650	651	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	199	201	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	229	first strand
Strand 2	B	581	582	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	513	first strand
Strand 2	B	240	242	anti-parallel
Strand 3	B	730	731	parallel

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There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	270	first strand
Strand 2	B	257	261	anti-parallel
Strand 3	B	247	251	anti-parallel
Strand 4	B	402	410	anti-parallel
Strand 5	B	287	297	anti-parallel
Strand 6	B	308	319	anti-parallel
Strand 7	B	322	329	anti-parallel
Strand 8	B	335	341	anti-parallel
Strand 9	B	351	358	anti-parallel
Strand 10	B	364	371	anti-parallel
Strand 11	B	384	385	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	270	first strand
Strand 2	B	257	261	anti-parallel
Strand 3	B	247	251	anti-parallel
Strand 4	B	402	410	anti-parallel
Strand 5	B	437	440	anti-parallel
Strand 6	B	421	422	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	382	first strand
Strand 2	B	396	397	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	449	first strand
Strand 2	B	491	495	anti-parallel
Strand 3	B	479	481	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	453	first strand
Strand 2	B	467	469	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	518	first strand
Strand 2	B	559	564	anti-parallel
Strand 3	B	716	721	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	597	602	first strand
Strand 2	B	605	610	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	659	662	first strand
Strand 2	B	689	692	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	678	679	first strand
Strand 2	B	769	772	anti-parallel
Strand 3	B	775	778	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	739	first strand
Strand 2	B	742	747	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	12	13	first strand
Strand 2	S	119	122	anti-parallel
Strand 3	S	107	114	anti-parallel
Strand 4	S	56	61	anti-parallel
Strand 5	S	66	68	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	12	13	first strand
Strand 2	S	119	122	anti-parallel
Strand 3	S	107	114	anti-parallel
Strand 4	S	125	127	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	43	48	first strand
Strand 2	S	89	94	anti-parallel
Strand 3	S	80	84	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	161	165	first strand
Strand 2	S	135	140	anti-parallel
Strand 3	S	220	224	anti-parallel
Strand 4	S	230	233	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	147	first strand
Strand 2	S	150	151	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	174	179	first strand
Strand 2	S	191	204	anti-parallel
Strand 3	S	249	256	anti-parallel
Strand 4	S	241	242	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	235	237	first strand
Strand 2	S	249	256	anti-parallel
Strand 3	S	191	204	anti-parallel
Strand 4	S	261	264	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	119	122	anti-parallel
Strand 3	A	107	114	anti-parallel
Strand 4	A	125	128	anti-parallel
Strand 5	A	34	36	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	119	122	anti-parallel
Strand 3	A	107	114	anti-parallel
Strand 4	A	56	60	anti-parallel
Strand 5	A	66	68	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	48	first strand
Strand 2	A	89	94	anti-parallel
Strand 3	A	80	82	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	165	first strand
Strand 2	A	135	140	anti-parallel
Strand 3	A	220	224	anti-parallel
Strand 4	A	230	232	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	150	152	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	179	first strand
Strand 2	A	191	204	anti-parallel
Strand 3	A	249	256	anti-parallel
Strand 4	A	241	242	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	238	first strand
Strand 2	A	249	256	anti-parallel
Strand 3	A	191	204	anti-parallel
Strand 4	A	261	263	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	186	187	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WWC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WWC