Analysis of interatomic Contacts of Structural Units in PDB entry:
9WWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WWS entry

There are 4 chains in PDB entry 9WWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 TYR 403ASN 510
D
 TYR 403ASN 510
A
 MET 1LEU 462
B
 MET 1LEU 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 9WWS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
404 418Right-handed alpha
Helix 2
AA2
C
421 445Right-handed alpha
Helix 3
AA3
C
446 448Right-handed 310
Helix 4
AA4
C
449 462Right-handed alpha
Helix 5
AA5
C
463 472Right-handed alpha
Helix 6
AA6
C
476 508Right-handed alpha
Helix 7
AA7
D
406 419Right-handed alpha
Helix 8
AA8
D
421 445Right-handed alpha
Helix 9
AA9
D
446 448Right-handed 310
Helix 10
AB1
D
449 461Right-handed alpha
Helix 11
AB2
D
464 472Right-handed alpha
Helix 12
AB3
D
473 475Right-handed 310
Helix 13
AB4
D
476 505Right-handed alpha
Helix 14
AB5
A
2 23Right-handed alpha
Helix 15
AB6
A
24 26Right-handed 310
Helix 16
AB7
A
29 50Right-handed alpha
Helix 17
AB8
A
56 77Right-handed alpha
Helix 18
AB9
A
79 81Right-handed 310
Helix 19
AC1
A
82 108Right-handed alpha
Helix 20
AC2
A
114 146Right-handed alpha
Helix 21
AC3
A
160 181Right-handed alpha
Helix 22
AC4
A
183 208Right-handed alpha
Helix 23
AC5
A
213 237Right-handed alpha
Helix 24
AC6
A
238 263Right-handed alpha
Helix 25
AC7
A
266 272Right-handed alpha
Helix 26
AC8
A
295 305Right-handed alpha
Helix 27
AC9
A
314 320Right-handed alpha
Helix 28
AD1
A
322 336Right-handed alpha
Helix 29
AD2
A
353 362Right-handed alpha
Helix 30
AD3
A
372 376Right-handed alpha
Helix 31
AD4
A
413 417Right-handed 310
Helix 32
AD5
A
436 441Right-handed 310
Helix 33
AD6
A
450 462Right-handed alpha
Helix 34
AD7
B
2 23Right-handed alpha
Helix 35
AD8
B
24 26Right-handed 310
Helix 36
AD9
B
29 50Right-handed alpha
Helix 37
AE1
B
56 76Right-handed alpha
Helix 38
AE2
B
82 108Right-handed alpha
Helix 39
AE3
B
114 148Right-handed alpha
Helix 40
AE4
B
159 180Right-handed alpha
Helix 41
AE5
B
183 208Right-handed alpha
Helix 42
AE6
B
213 236Right-handed alpha
Helix 43
AE7
B
238 263Right-handed alpha
Helix 44
AE8
B
266 272Right-handed alpha
Helix 45
AE9
B
295 305Right-handed alpha
Helix 46
AF1
B
314 320Right-handed alpha
Helix 47
AF2
B
322 334Right-handed alpha
Helix 48
AF3
B
353 362Right-handed alpha
Helix 49
AF4
B
365 367Right-handed 310
Helix 50
AF5
B
371 375Right-handed 310
Helix 51
AF6
B
378 382Right-handed 310
Helix 52
AF7
B
395 399Right-handed 310
Helix 53
AF8
B
413 417Right-handed 310
Helix 54
AF9
B
436 441Right-handed 310
Helix 55
AG1
B
451 461Right-handed alpha
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There are 2 sheets in PDB entry 9WWS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
339 344parallel
Strand 3
A
308 313parallel
Strand 4
A
384 388parallel
Strand 5
A
419 424parallel
Strand 6
A
444 448parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 370first strand
Strand 2
B
341 343parallel
Strand 3
B
310 313parallel
Strand 4
B
385 388parallel
Strand 5
B
422 424parallel
Strand 6
B
446 448parallel
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