Analysis of interatomic Contacts of Structural Units in PDB entry:
9WWW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WWW entry

There are 4 chains in PDB entry 9WWW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 462
B
 MET 1LEU 462
C
 TYR 403ASN 510
D
 TYR 403ASN 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9WWW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 24Right-handed alpha
Helix 2
AA2
A
26 51Right-handed alpha
Helix 3
AA3
A
56 77Right-handed alpha
Helix 4
AA4
A
79 81Right-handed 310
Helix 5
AA5
A
82 109Right-handed alpha
Helix 6
AA6
A
114 147Right-handed alpha
Helix 7
AA7
A
159 181Right-handed alpha
Helix 8
AA8
A
183 209Right-handed alpha
Helix 9
AA9
A
210 212Right-handed 310
Helix 10
AB1
A
213 236Right-handed alpha
Helix 11
AB2
A
238 263Right-handed alpha
Helix 12
AB3
A
266 272Right-handed alpha
Helix 13
AB4
A
295 305Right-handed alpha
Helix 14
AB5
A
314 320Right-handed alpha
Helix 15
AB6
A
322 336Right-handed alpha
Helix 16
AB7
A
353 362Right-handed alpha
Helix 17
AB8
A
365 369Right-handed 310
Helix 18
AB9
A
395 400Right-handed 310
Helix 19
AC1
A
436 441Right-handed alpha
Helix 20
AC2
A
451 462Right-handed alpha
Helix 21
AC3
B
2 24Right-handed alpha
Helix 22
AC4
B
26 50Right-handed alpha
Helix 23
AC5
B
56 78Right-handed alpha
Helix 24
AC6
B
82 108Right-handed alpha
Helix 25
AC7
B
114 146Right-handed alpha
Helix 26
AC8
B
160 181Right-handed alpha
Helix 27
AC9
B
183 208Right-handed alpha
Helix 28
AD1
B
210 212Right-handed 310
Helix 29
AD2
B
213 237Right-handed alpha
Helix 30
AD3
B
238 263Right-handed alpha
Helix 31
AD4
B
266 272Right-handed alpha
Helix 32
AD5
B
295 305Right-handed alpha
Helix 33
AD6
B
314 320Right-handed alpha
Helix 34
AD7
B
322 336Right-handed alpha
Helix 35
AD8
B
353 362Right-handed alpha
Helix 36
AD9
B
372 376Right-handed alpha
Helix 37
AE1
B
395 399Right-handed 310
Helix 38
AE2
B
436 441Right-handed 310
Helix 39
AE3
B
450 462Right-handed alpha
Helix 40
AE4
C
405 419Right-handed alpha
Helix 41
AE5
C
421 445Right-handed alpha
Helix 42
AE6
C
446 448Right-handed 310
Helix 43
AE7
C
449 462Right-handed alpha
Helix 44
AE8
C
464 475Right-handed alpha
Helix 45
AE9
C
475 507Right-handed alpha
Helix 46
AF1
D
404 419Right-handed alpha
Helix 47
AF2
D
421 445Right-handed alpha
Helix 48
AF3
D
449 462Right-handed alpha
Helix 49
AF4
D
464 474Right-handed alpha
Helix 50
AF5
D
475 508Right-handed alpha
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There are 3 sheets in PDB entry 9WWW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
384 385parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
422 424parallel
Strand 3
A
447 448parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 371first strand
Strand 2
B
339 344parallel
Strand 3
B
308 312parallel
Strand 4
B
384 388parallel
Strand 5
B
419 423parallel
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