Analysis of interatomic Contacts of Structural Units in PDB entry:
9WWX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WWX entry

There are 3 chains in PDB entry 9WWX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	PHE 480
B	LEU 2	PHE 480
C	LEU 2	LEU 285

There are 73 helices in PDB entry 9WWX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	48	52	Right-handed 310
Helix 3	AA3	A	66	75	Right-handed alpha
Helix 4	AA4	A	92	102	Right-handed alpha
Helix 5	AA5	A	103	105	Right-handed 310
Helix 6	AA6	A	107	111	Right-handed 310
Helix 7	AA7	A	113	118	Right-handed 310
Helix 8	AA8	A	121	128	Right-handed alpha
Helix 9	AA9	A	166	182	Right-handed alpha
Helix 10	AB1	A	191	196	Right-handed 310
Helix 11	AB2	A	208	224	Right-handed alpha
Helix 12	AB3	A	236	244	Right-handed alpha
Helix 13	AB4	A	253	265	Right-handed alpha
Helix 14	AB5	A	267	277	Right-handed alpha
Helix 15	AB6	A	294	297	Right-handed 310
Helix 16	AB7	A	301	314	Right-handed alpha
Helix 17	AB8	A	340	345	Right-handed alpha
Helix 18	AB9	A	348	362	Right-handed alpha
Helix 19	AC1	A	370	374	Right-handed alpha
Helix 20	AC2	A	379	387	Right-handed alpha
Helix 21	AC3	A	388	394	Right-handed 310
Helix 22	AC4	A	398	406	Right-handed alpha
Helix 23	AC5	A	408	424	Right-handed alpha
Helix 24	AC6	A	425	429	Right-handed 310
Helix 25	AC7	B	19	31	Right-handed alpha
Helix 26	AC8	B	48	52	Right-handed 310
Helix 27	AC9	B	66	69	Right-handed 310
Helix 28	AD1	B	70	75	Right-handed alpha
Helix 29	AD2	B	92	102	Right-handed alpha
Helix 30	AD3	B	103	105	Right-handed 310
Helix 31	AD4	B	107	111	Right-handed 310
Helix 32	AD5	B	113	118	Right-handed 310
Helix 33	AD6	B	121	128	Right-handed alpha
Helix 34	AD7	B	166	182	Right-handed alpha
Helix 35	AD8	B	191	196	Right-handed 310
Helix 36	AD9	B	208	224	Right-handed alpha
Helix 37	AE1	B	235	244	Right-handed alpha
Helix 38	AE2	B	253	265	Right-handed alpha
Helix 39	AE3	B	267	277	Right-handed alpha
Helix 40	AE4	B	294	297	Right-handed 310
Helix 41	AE5	B	301	316	Right-handed alpha
Helix 42	AE6	B	340	345	Right-handed alpha
Helix 43	AE7	B	348	361	Right-handed alpha
Helix 44	AE8	B	370	374	Right-handed alpha
Helix 45	AE9	B	379	387	Right-handed alpha
Helix 46	AF1	B	388	394	Right-handed 310
Helix 47	AF2	B	398	406	Right-handed alpha
Helix 48	AF3	B	408	424	Right-handed alpha
Helix 49	AF4	B	425	429	Right-handed 310
Helix 50	AF5	C	19	31	Right-handed alpha
Helix 51	AF6	C	48	52	Right-handed 310
Helix 52	AF7	C	66	71	Right-handed alpha
Helix 53	AF8	C	95	102	Right-handed alpha
Helix 54	AF9	C	103	105	Right-handed 310
Helix 55	AG1	C	107	111	Right-handed 310
Helix 56	AG2	C	113	118	Right-handed 310
Helix 57	AG3	C	121	128	Right-handed alpha
Helix 58	AG4	C	166	182	Right-handed alpha
Helix 59	AG5	C	191	196	Right-handed 310
Helix 60	AG6	C	208	224	Right-handed alpha
Helix 61	AG7	C	235	244	Right-handed alpha
Helix 62	AG8	C	253	264	Right-handed alpha
Helix 63	AG9	C	267	277	Right-handed alpha
Helix 64	AH1	C	294	297	Right-handed 310
Helix 65	AH2	C	301	314	Right-handed alpha
Helix 66	AH3	C	340	345	Right-handed alpha
Helix 67	AH4	C	348	361	Right-handed alpha
Helix 68	AH5	C	370	374	Right-handed alpha
Helix 69	AH6	C	379	387	Right-handed alpha
Helix 70	AH7	C	388	394	Right-handed 310
Helix 71	AH8	C	398	406	Right-handed alpha
Helix 72	AH9	C	408	424	Right-handed alpha
Helix 73	AI1	C	425	429	Right-handed 310

There are 15 sheets in PDB entry 9WWX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	A	186	189	parallel
Strand 3	A	78	83	parallel
Strand 4	A	37	40	parallel
Strand 5	A	8	11	parallel
Strand 6	A	365	369	parallel
Strand 7	A	282	284	parallel
Strand 8	A	250	251	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	158	160	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	141	first strand
Strand 2	A	147	151	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	334	337	anti-parallel
Strand 3	A	320	321	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	440	447	anti-parallel
Strand 3	A	450	457	anti-parallel
Strand 4	A	462	469	anti-parallel
Strand 5	A	474	477	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	186	189	parallel
Strand 3	B	78	83	parallel
Strand 4	B	37	40	parallel
Strand 5	B	8	11	parallel
Strand 6	B	365	369	parallel
Strand 7	B	282	283	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	158	160	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	141	first strand
Strand 2	B	147	151	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	334	337	anti-parallel
Strand 3	B	320	321	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	434	first strand
Strand 2	B	440	447	anti-parallel
Strand 3	B	450	457	anti-parallel
Strand 4	B	462	468	anti-parallel
Strand 5	B	475	477	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	230	first strand
Strand 2	C	186	189	parallel
Strand 3	C	78	83	parallel
Strand 4	C	37	40	parallel
Strand 5	C	8	11	parallel
Strand 6	C	365	369	parallel
Strand 7	C	282	284	parallel
Strand 8	C	250	251	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	158	160	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	141	first strand
Strand 2	C	147	151	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	334	337	anti-parallel
Strand 3	C	320	321	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	434	first strand
Strand 2	C	440	447	anti-parallel
Strand 3	C	450	457	anti-parallel
Strand 4	C	462	469	anti-parallel
Strand 5	C	474	477	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WWX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WWX