Analysis of interatomic Contacts of Structural Units in PDB entry:
9WXH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WXH entry

There are 5 chains in PDB entry 9WXH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 1	A 40
B	MET 1	ARG 563
C	MET 1	ILE 626
D	LYS 7	ASP 1234
E	U 1	U 38

There are 85 helices in PDB entry 9WXH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	21	39	Right-handed alpha
Helix 2	AA2	B	39	46	Right-handed alpha
Helix 3	AA3	B	132	150	Right-handed alpha
Helix 4	AA4	B	152	156	Right-handed 310
Helix 5	AA5	B	170	187	Right-handed alpha
Helix 6	AA6	B	229	240	Right-handed alpha
Helix 7	AA7	B	240	254	Right-handed alpha
Helix 8	AA8	B	263	269	Right-handed alpha
Helix 9	AA9	B	273	277	Right-handed 310
Helix 10	AB1	B	289	296	Right-handed alpha
Helix 11	AB2	B	299	326	Right-handed alpha
Helix 12	AB3	B	328	330	Right-handed 310
Helix 13	AB4	B	355	373	Right-handed alpha
Helix 14	AB5	B	403	418	Right-handed alpha
Helix 15	AB6	B	421	427	Right-handed 310
Helix 16	AB7	B	444	453	Right-handed alpha
Helix 17	AB8	B	459	464	Right-handed 310
Helix 18	AB9	B	469	483	Right-handed alpha
Helix 19	AC1	B	486	499	Right-handed alpha
Helix 20	AC2	B	501	513	Right-handed alpha
Helix 21	AC3	B	521	542	Right-handed alpha
Helix 22	AC4	B	547	560	Right-handed alpha
Helix 23	AC5	C	43	66	Right-handed alpha
Helix 24	AC6	C	68	72	Right-handed 310
Helix 25	AC7	C	77	82	Right-handed alpha
Helix 26	AC8	C	104	109	Right-handed alpha
Helix 27	AC9	C	159	173	Right-handed alpha
Helix 28	AD1	C	180	184	Right-handed 310
Helix 29	AD2	C	245	261	Right-handed alpha
Helix 30	AD3	C	271	273	Right-handed 310
Helix 31	AD4	C	274	281	Right-handed alpha
Helix 32	AD5	C	282	284	Right-handed 310
Helix 33	AD6	C	335	339	Right-handed 310
Helix 34	AD7	C	356	360	Right-handed 310
Helix 35	AD8	C	410	426	Right-handed alpha
Helix 36	AD9	C	459	462	Right-handed 310
Helix 37	AE1	C	486	503	Right-handed alpha
Helix 38	AE2	C	520	528	Right-handed alpha
Helix 39	AE3	C	554	569	Right-handed alpha
Helix 40	AE4	C	573	580	Right-handed alpha
Helix 41	AE5	C	587	591	Right-handed 310
Helix 42	AE6	C	595	599	Right-handed 310
Helix 43	AE7	D	59	63	Right-handed 310
Helix 44	AE8	D	67	83	Right-handed alpha
Helix 45	AE9	D	86	93	Right-handed alpha
Helix 46	AF1	D	122	126	Right-handed 310
Helix 47	AF2	D	176	189	Right-handed alpha
Helix 48	AF3	D	190	192	Right-handed 310
Helix 49	AF4	D	202	206	Right-handed 310
Helix 50	AF5	D	222	232	Right-handed alpha
Helix 51	AF6	D	238	243	Right-handed 310
Helix 52	AF7	D	247	256	Right-handed alpha
Helix 53	AF8	D	286	290	Right-handed 310
Helix 54	AF9	D	314	333	Right-handed alpha
Helix 55	AG1	D	351	358	Right-handed alpha
Helix 56	AG2	D	423	443	Right-handed alpha
Helix 57	AG3	D	451	455	Right-handed 310
Helix 58	AG4	D	466	470	Right-handed 310
Helix 59	AG5	D	471	485	Right-handed alpha
Helix 60	AG6	D	532	536	Right-handed 310
Helix 61	AG7	D	540	542	Right-handed 310
Helix 62	AG8	D	610	626	Right-handed alpha
Helix 63	AG9	D	643	647	Right-handed 310
Helix 64	AH1	D	669	673	Right-handed 310
Helix 65	AH2	D	682	691	Right-handed alpha
Helix 66	AH3	D	754	756	Right-handed 310
Helix 67	AH4	D	766	773	Right-handed alpha
Helix 68	AH5	D	779	796	Right-handed alpha
Helix 69	AH6	D	800	804	Right-handed 310
Helix 70	AH7	D	806	811	Right-handed 310
Helix 71	AH8	D	866	871	Right-handed 310
Helix 72	AH9	D	872	876	Right-handed 310
Helix 73	AI1	D	886	892	Right-handed alpha
Helix 74	AI2	D	900	905	Right-handed 310
Helix 75	AI3	D	922	928	Right-handed alpha
Helix 76	AI4	D	929	932	Right-handed 310
Helix 77	AI5	D	950	954	Right-handed alpha
Helix 78	AI6	D	1021	1024	Right-handed 310
Helix 79	AI7	D	1047	1059	Right-handed alpha
Helix 80	AI8	D	1071	1075	Right-handed 310
Helix 81	AI9	D	1090	1097	Right-handed alpha
Helix 82	AJ1	D	1139	1151	Right-handed alpha
Helix 83	AJ2	D	1152	1164	Right-handed alpha
Helix 84	AJ3	D	1165	1168	Right-handed 310
Helix 85	AJ4	D	1186	1195	Right-handed alpha

There are 40 sheets in PDB entry 9WXH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	124	129	anti-parallel
Strand 3	B	3	10	anti-parallel
Strand 4	B	157	163	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	201	first strand
Strand 2	B	209	210	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	216	first strand
Strand 2	B	224	227	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	345	first strand
Strand 2	B	348	354	anti-parallel
Strand 3	B	279	287	anti-parallel
Strand 4	B	391	399	anti-parallel
Strand 5	B	429	434	parallel
Strand 6	B	465	466	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	336	337	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	378	first strand
Strand 2	B	384	388	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	101	103	anti-parallel
Strand 3	C	146	157	anti-parallel
Strand 4	C	2	13	anti-parallel
Strand 5	C	188	193	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	98	first strand
Strand 2	C	146	157	anti-parallel
Strand 3	C	2	13	anti-parallel
Strand 4	C	197	200	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	122	first strand
Strand 2	C	129	138	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	286	first strand
Strand 2	C	399	404	anti-parallel
Strand 3	C	290	291	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	286	first strand
Strand 2	C	399	404	anti-parallel
Strand 3	C	215	222	anti-parallel
Strand 4	C	437	444	anti-parallel
Strand 5	C	429	432	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	239	first strand
Strand 2	C	380	393	parallel
Strand 3	C	365	375	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	298	first strand
Strand 2	C	450	451	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	307	first strand
Strand 2	C	317	318	anti-parallel
Strand 3	C	614	615	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	328	first strand
Strand 2	C	623	625	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	506	512	first strand
Strand 2	C	545	550	anti-parallel
Strand 3	C	464	469	anti-parallel
Strand 4	C	603	605	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	515	518	first strand
Strand 2	C	537	540	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	66	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	166	175	anti-parallel
Strand 4	D	110	111	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	66	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	166	175	anti-parallel
Strand 4	D	15	25	anti-parallel
Strand 5	D	210	221	anti-parallel
Strand 6	D	244	245	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	42	first strand
Strand 2	D	48	56	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	95	first strand
Strand 2	D	105	106	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	143	first strand
Strand 2	D	150	160	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	313	first strand
Strand 2	D	371	373	anti-parallel
Strand 3	D	410	418	anti-parallel
Strand 4	D	366	368	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	313	first strand
Strand 2	D	371	373	anti-parallel
Strand 3	D	410	418	anti-parallel
Strand 4	D	269	278	anti-parallel
Strand 5	D	459	465	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	282	first strand
Strand 2	D	395	407	anti-parallel
Strand 3	D	300	301	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	282	first strand
Strand 2	D	395	407	anti-parallel
Strand 3	D	381	388	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	518	519	first strand
Strand 2	D	1226	1227	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	523	526	first strand
Strand 2	D	980	983	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	537	538	first strand
Strand 2	D	884	885	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	914	916	first strand
Strand 2	D	1036	1046	anti-parallel
Strand 3	D	565	575	anti-parallel
Strand 4	D	1078	1088	anti-parallel
Strand 5	D	1066	1067	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	914	916	first strand
Strand 2	D	1036	1046	anti-parallel
Strand 3	D	565	575	anti-parallel
Strand 4	D	1078	1088	anti-parallel
Strand 5	D	1109	1111	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	582	585	first strand
Strand 2	D	596	600	anti-parallel
Strand 3	D	1026	1028	parallel
Strand 4	D	938	939	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	602	603	first strand
Strand 2	D	606	609	anti-parallel
Strand 3	D	919	920	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	639	641	first strand
Strand 2	D	860	862	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	776	777	first strand
Strand 2	D	660	667	anti-parallel
Strand 3	D	650	657	anti-parallel
Strand 4	D	840	845	anti-parallel
Strand 5	D	850	854	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	674	676	first strand
Strand 2	D	748	752	anti-parallel
Strand 3	D	723	729	anti-parallel
Strand 4	D	703	706	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	758	759	first strand
Strand 2	D	764	765	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	825	827	first strand
Strand 2	D	830	832	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	893	895	first strand
Strand 2	D	909	911	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	955	957	first strand
Strand 2	D	975	977	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WXH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WXH