Analysis of interatomic Contacts of Structural Units in PDB entry:
9WXM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WXM entry

There are 6 chains in PDB entry 9WXM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	GLU 44	VAL 57
R	THR 32	CYS 318
A	CYS 3	TYR 354
B	GLU 3	ASN 340
C	ALA 10	GLU 63
D	ASP 1	LYS 236

There are 28 helices in PDB entry 9WXM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	44	48	Right-handed 310
Helix 2	AA2	R	34	60	Right-handed alpha
Helix 3	AA3	R	66	81	Right-handed alpha
Helix 4	AA4	R	85	89	Right-handed 310
Helix 5	AA5	R	104	136	Right-handed alpha
Helix 6	AA6	R	140	145	Right-handed alpha
Helix 7	AA7	R	146	165	Right-handed alpha
Helix 8	AA8	R	165	172	Right-handed alpha
Helix 9	AA9	R	189	204	Right-handed alpha
Helix 10	AB1	R	204	228	Right-handed alpha
Helix 11	AB2	R	232	235	Right-handed 310
Helix 12	AB3	R	236	271	Right-handed alpha
Helix 13	AB4	R	278	305	Right-handed alpha
Helix 14	AB5	R	308	318	Right-handed alpha
Helix 15	AB6	A	6	33	Right-handed alpha
Helix 16	AB7	A	46	53	Right-handed alpha
Helix 17	AB8	A	207	216	Right-handed 310
Helix 18	AB9	A	241	255	Right-handed alpha
Helix 19	AC1	A	270	279	Right-handed alpha
Helix 20	AC2	A	282	286	Right-handed 310
Helix 21	AC3	A	296	309	Right-handed alpha
Helix 22	AC4	A	327	352	Right-handed alpha
Helix 23	AC5	B	4	24	Right-handed alpha
Helix 24	AC6	B	29	34	Right-handed alpha
Helix 25	AC7	C	11	25	Right-handed alpha
Helix 26	AC8	C	29	44	Right-handed alpha
Helix 27	AC9	D	53	56	Right-handed 310
Helix 28	AD1	D	62	65	Right-handed 310

There are 15 sheets in PDB entry 9WXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	123	125	anti-parallel
Strand 4	B	134	137	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	276	first strand
Strand 2	B	287	289	anti-parallel
Strand 3	B	293	297	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	24	25	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	94	anti-parallel
Strand 4	D	38	39	anti-parallel
Strand 5	D	45	46	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	49	51	anti-parallel
Strand 3	D	33	35	anti-parallel
Strand 4	D	97	99	anti-parallel
Strand 5	D	110	111	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	73	first strand
Strand 2	D	78	80	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	130	first strand
Strand 2	D	142	149	anti-parallel
Strand 3	D	199	205	anti-parallel
Strand 4	D	194	195	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	232	234	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	183	first strand
Strand 2	D	173	178	anti-parallel
Strand 3	D	162	167	anti-parallel
Strand 4	D	214	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WXM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WXM