Analysis of interatomic Contacts of Structural Units in PDB entry:
9WYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WYD entry

There are 3 chains in PDB entry 9WYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 27LEU 290
B
 ARG 23MET 119
C
 GLN 491LEU 704
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9WYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 104Right-handed alpha
Helix 2
AA2
A
154 168Right-handed alpha
Helix 3
AA3
A
171 180Right-handed alpha
Helix 4
AA4
A
180 193Right-handed alpha
Helix 5
AA5
A
194 199Right-handed 310
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There are 9 sheets in PDB entry 9WYD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
56 62anti-parallel
Strand 3
A
47 53anti-parallel
Strand 4
A
29 37anti-parallel
Strand 5
A
112 122anti-parallel
Strand 6
A
126 135anti-parallel
Strand 7
A
138 144anti-parallel
Strand 8
A
149 151anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 209first strand
Strand 2
A
219 226anti-parallel
Strand 3
A
257 263anti-parallel
Strand 4
A
246 251anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 237first strand
Strand 2
A
273 278anti-parallel
Strand 3
A
286 288anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 31first strand
Strand 2
B
41 50anti-parallel
Strand 3
B
82 90anti-parallel
Strand 4
B
70 71anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 31first strand
Strand 2
B
41 50anti-parallel
Strand 3
B
82 90anti-parallel
Strand 4
B
75 76anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
56 61anti-parallel
Strand 3
B
98 103anti-parallel
Strand 4
B
111 114anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
534 537first strand
Strand 2
C
527 531anti-parallel
Strand 3
C
567 570anti-parallel
Strand 4
C
573 588anti-parallel
Strand 5
C
592 603anti-parallel
Strand 6
C
647 657anti-parallel
Strand 7
C
540 550anti-parallel
Strand 8
C
492 498anti-parallel
Strand 9
C
695 700anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
513 514first strand
Strand 2
C
607 614anti-parallel
Strand 3
C
636 642anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
616 617first strand
Strand 2
C
630 631anti-parallel
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