Analysis of interatomic Contacts of Structural Units in PDB entry:
9WYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WYR entry

There are 2 chains in PDB entry 9WYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 309SER 601
B
 VAL 310SER 600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9WYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
313 321Right-handed alpha
Helix 2
AA2
A
325 327Right-handed 310
Helix 3
AA3
A
365 370Right-handed alpha
Helix 4
AA4
A
399 405Right-handed alpha
Helix 5
AA5
A
413 434Right-handed alpha
Helix 6
AA6
A
445 447Right-handed 310
Helix 7
AA7
A
489 495Right-handed alpha
Helix 8
AA8
A
499 517Right-handed alpha
Helix 9
AA9
A
534 543Right-handed alpha
Helix 10
AB1
A
546 553Right-handed alpha
Helix 11
AB2
A
554 555Right-handed 310
Helix 12
AB3
A
556 560Right-handed 310
Helix 13
AB4
A
564 579Right-handed alpha
Helix 14
AB5
A
582 586Right-handed 310
Helix 15
AB6
A
588 599Right-handed alpha
Helix 16
AB7
B
314 321Right-handed alpha
Helix 17
AB8
B
325 329Right-handed 310
Helix 18
AB9
B
366 371Right-handed 310
Helix 19
AC1
B
399 406Right-handed alpha
Helix 20
AC2
B
413 434Right-handed alpha
Helix 21
AC3
B
445 447Right-handed 310
Helix 22
AC4
B
489 495Right-handed alpha
Helix 23
AC5
B
499 517Right-handed alpha
Helix 24
AC6
B
533 544Right-handed alpha
Helix 25
AC7
B
548 555Right-handed alpha
Helix 26
AC8
B
564 579Right-handed alpha
Helix 27
AC9
B
582 586Right-handed 310
Helix 28
AD1
B
588 598Right-handed alpha
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There are 5 sheets in PDB entry 9WYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
379 383parallel
Strand 3
A
388 393anti-parallel
Strand 4
A
346 353anti-parallel
Strand 5
A
336 343anti-parallel
Strand 6
A
329 332anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 451first strand
Strand 2
A
457 459anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
532 533anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 343first strand
Strand 2
B
346 353anti-parallel
Strand 3
B
388 393anti-parallel
Strand 4
B
379 383anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
449 451first strand
Strand 2
B
457 459anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il