Analysis of interatomic Contacts of Structural Units in PDB entry:
9WYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WYS entry

There are 2 chains in PDB entry 9WYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 309SER 601
B
 VAL 310SER 600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9WYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
313 321Right-handed alpha
Helix 2
AA2
A
325 327Right-handed 310
Helix 3
AA3
A
399 405Right-handed alpha
Helix 4
AA4
A
413 433Right-handed alpha
Helix 5
AA5
A
445 447Right-handed 310
Helix 6
AA6
A
500 516Right-handed alpha
Helix 7
AA7
A
534 543Right-handed alpha
Helix 8
AA8
A
546 553Right-handed alpha
Helix 9
AA9
A
554 555Right-handed 310
Helix 10
AB1
A
556 560Right-handed 310
Helix 11
AB2
A
564 579Right-handed alpha
Helix 12
AB3
A
582 586Right-handed 310
Helix 13
AB4
A
588 598Right-handed alpha
Helix 14
AB5
B
314 321Right-handed alpha
Helix 15
AB6
B
325 329Right-handed 310
Helix 16
AB7
B
366 370Right-handed 310
Helix 17
AB8
B
399 406Right-handed alpha
Helix 18
AB9
B
413 434Right-handed alpha
Helix 19
AC1
B
445 447Right-handed 310
Helix 20
AC2
B
489 494Right-handed alpha
Helix 21
AC3
B
500 517Right-handed alpha
Helix 22
AC4
B
533 541Right-handed alpha
Helix 23
AC5
B
548 553Right-handed alpha
Helix 24
AC6
B
556 560Right-handed 310
Helix 25
AC7
B
564 579Right-handed alpha
Helix 26
AC8
B
582 586Right-handed 310
Helix 27
AC9
B
590 598Right-handed alpha
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There are 5 sheets in PDB entry 9WYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
379 383parallel
Strand 3
A
388 393anti-parallel
Strand 4
A
346 353anti-parallel
Strand 5
A
337 343anti-parallel
Strand 6
A
329 332anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 451first strand
Strand 2
A
457 459anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
532 533anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 343first strand
Strand 2
B
346 352anti-parallel
Strand 3
B
389 393anti-parallel
Strand 4
B
379 383anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
449 451first strand
Strand 2
B
457 459anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il