Analysis of interatomic Contacts of Structural Units in PDB entry:
9WYT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WYT entry

There are 3 chains in PDB entry 9WYT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 343	GLN 565
B	SER 346	ALA 566
J	ALA 24	LEU 1380

There are 35 helices in PDB entry 9WYT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	358	364	Right-handed alpha
Helix 2	AA2	A	419	426	Right-handed alpha
Helix 3	AA3	A	535	540	Right-handed alpha
Helix 4	AA4	B	358	364	Right-handed alpha
Helix 5	AA5	B	419	426	Right-handed alpha
Helix 6	AA6	B	464	469	Right-handed alpha
Helix 7	AA7	B	499	501	Right-handed 310
Helix 8	AA8	B	535	541	Right-handed alpha
Helix 9	AA9	B	553	555	Right-handed 310
Helix 10	AB1	J	28	37	Right-handed alpha
Helix 11	AB2	J	66	68	Right-handed 310
Helix 12	AB3	J	75	77	Right-handed 310
Helix 13	AB4	J	107	112	Right-handed alpha
Helix 14	AB5	J	122	126	Right-handed 310
Helix 15	AB6	J	245	255	Right-handed alpha
Helix 16	AB7	J	265	277	Right-handed alpha
Helix 17	AB8	J	361	366	Right-handed alpha
Helix 18	AB9	J	392	403	Right-handed alpha
Helix 19	AC1	J	413	426	Right-handed alpha
Helix 20	AC2	J	439	443	Right-handed 310
Helix 21	AC3	J	532	537	Right-handed alpha
Helix 22	AC4	J	551	565	Right-handed alpha
Helix 23	AC5	J	566	570	Right-handed 310
Helix 24	AC6	J	688	695	Right-handed alpha
Helix 25	AC7	J	708	723	Right-handed alpha
Helix 26	AC8	J	739	743	Right-handed 310
Helix 27	AC9	J	829	840	Right-handed alpha
Helix 28	AD1	J	849	862	Right-handed alpha
Helix 29	AD2	J	981	992	Right-handed alpha
Helix 30	AD3	J	1001	1011	Right-handed alpha
Helix 31	AD4	J	1025	1030	Right-handed alpha
Helix 32	AD5	J	1131	1142	Right-handed alpha
Helix 33	AD6	J	1151	1166	Right-handed alpha
Helix 34	AD7	J	1269	1280	Right-handed alpha
Helix 35	AD8	J	1289	1301	Right-handed alpha

There are 35 sheets in PDB entry 9WYT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	369	372	anti-parallel
Strand 3	A	415	417	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	A	429	433	anti-parallel
Strand 3	A	442	446	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	404	first strand
Strand 2	A	410	413	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	474	first strand
Strand 2	A	525	534	anti-parallel
Strand 3	A	503	505	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	482	first strand
Strand 2	A	525	534	anti-parallel
Strand 3	A	509	510	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	492	first strand
Strand 2	A	544	549	anti-parallel
Strand 3	A	557	562	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	355	first strand
Strand 2	B	369	377	anti-parallel
Strand 3	B	410	417	anti-parallel
Strand 4	B	401	402	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	388	first strand
Strand 2	B	428	433	anti-parallel
Strand 3	B	442	447	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	459	first strand
Strand 2	B	472	482	anti-parallel
Strand 3	B	525	534	anti-parallel
Strand 4	B	503	505	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	459	first strand
Strand 2	B	472	482	anti-parallel
Strand 3	B	525	534	anti-parallel
Strand 4	B	509	510	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	549	first strand
Strand 2	B	557	562	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	102	first strand
Strand 2	J	86	89	anti-parallel
Strand 3	J	78	81	anti-parallel
Strand 4	J	70	74	anti-parallel
Strand 5	J	38	43	anti-parallel
Strand 6	J	146	148	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	51	52	first strand
Strand 2	J	57	58	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	114	116	first strand
Strand 2	J	119	121	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	127	131	first strand
Strand 2	J	135	139	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	180	181	first strand
Strand 2	J	186	187	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	199	201	first strand
Strand 2	J	212	214	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	227	229	first strand
Strand 2	J	234	244	anti-parallel
Strand 3	J	346	353	anti-parallel
Strand 4	J	259	260	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	285	287	first strand
Strand 2	J	325	330	anti-parallel
Strand 3	J	339	341	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	377	378	first strand
Strand 2	J	382	391	anti-parallel
Strand 3	J	491	498	anti-parallel
Strand 4	J	406	407	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	445	446	first strand
Strand 2	J	431	436	anti-parallel
Strand 3	J	471	475	anti-parallel
Strand 4	J	482	486	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	517	519	first strand
Strand 2	J	522	526	anti-parallel
Strand 3	J	639	643	anti-parallel
Strand 4	J	545	546	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	587	588	first strand
Strand 2	J	572	578	anti-parallel
Strand 3	J	614	618	anti-parallel
Strand 4	J	626	629	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	673	675	first strand
Strand 2	J	794	796	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	735	736	first strand
Strand 2	J	747	748	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	771	772	first strand
Strand 2	J	782	783	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	813	816	first strand
Strand 2	J	819	828	anti-parallel
Strand 3	J	930	936	anti-parallel
Strand 4	J	843	844	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	884	885	first strand
Strand 2	J	869	876	anti-parallel
Strand 3	J	910	915	anti-parallel
Strand 4	J	921	925	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	961	963	first strand
Strand 2	J	966	971	anti-parallel
Strand 3	J	1090	1096	anti-parallel
Strand 4	J	995	996	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	961	963	first strand
Strand 2	J	966	971	anti-parallel
Strand 3	J	1090	1096	anti-parallel
Strand 4	J	1019	1024	parallel
Strand 5	J	1064	1070	anti-parallel
Strand 6	J	1077	1084	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1117	1118	first strand
Strand 2	J	1121	1130	anti-parallel
Strand 3	J	1224	1230	anti-parallel
Strand 4	J	1145	1146	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1182	1184	first strand
Strand 2	J	1169	1175	anti-parallel
Strand 3	J	1206	1209	anti-parallel
Strand 4	J	1215	1218	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1252	1254	first strand
Strand 2	J	1257	1260	anti-parallel
Strand 3	J	1374	1377	anti-parallel
Strand 4	J	1283	1284	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1323	1324	first strand
Strand 2	J	1309	1317	anti-parallel
Strand 3	J	1348	1355	anti-parallel
Strand 4	J	1361	1363	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1323	1324	first strand
Strand 2	J	1309	1317	anti-parallel
Strand 3	J	1371	1372	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WYT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WYT