Analysis of interatomic Contacts of Structural Units in PDB entry:
9WYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WYV entry

There are 6 chains in PDB entry 9WYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 419THR 715
B
 ASP 419THR 715
C
 ASP 419THR 715
D
 ASP 419THR 715
E
 ASP 419THR 715
F
 ASP 419THR 715
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 88 helices in PDB entry 9WYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
425 430Right-handed alpha
Helix 2
AA2
A
437 451Right-handed alpha
Helix 3
AA3
A
453 479Right-handed alpha
Helix 4
AA4
A
489 493Right-handed 310
Helix 5
AA5
A
496 515Right-handed alpha
Helix 6
AA6
A
516 518Right-handed 310
Helix 7
AA7
A
519 546Right-handed alpha
Helix 8
AA8
A
551 563Right-handed alpha
Helix 9
AA9
A
563 575Right-handed alpha
Helix 10
AB1
A
587 607Right-handed alpha
Helix 11
AB2
A
627 637Right-handed alpha
Helix 12
AB3
A
640 654Right-handed alpha
Helix 13
AB4
A
657 669Right-handed alpha
Helix 14
AB5
A
672 700Right-handed alpha
Helix 15
AB6
A
704 714Right-handed alpha
Helix 16
AB7
B
425 429Right-handed 310
Helix 17
AB8
B
437 451Right-handed alpha
Helix 18
AB9
B
453 479Right-handed alpha
Helix 19
AC1
B
490 493Right-handed 310
Helix 20
AC2
B
495 516Right-handed alpha
Helix 21
AC3
B
519 546Right-handed alpha
Helix 22
AC4
B
551 563Right-handed alpha
Helix 23
AC5
B
563 575Right-handed alpha
Helix 24
AC6
B
587 605Right-handed alpha
Helix 25
AC7
B
627 637Right-handed alpha
Helix 26
AC8
B
640 654Right-handed alpha
Helix 27
AC9
B
657 669Right-handed alpha
Helix 28
AD1
B
672 700Right-handed alpha
Helix 29
AD2
B
704 714Right-handed alpha
Helix 30
AD3
C
425 429Right-handed 310
Helix 31
AD4
C
437 451Right-handed alpha
Helix 32
AD5
C
453 479Right-handed alpha
Helix 33
AD6
C
489 493Right-handed 310
Helix 34
AD7
C
495 515Right-handed alpha
Helix 35
AD8
C
516 518Right-handed 310
Helix 36
AD9
C
519 546Right-handed alpha
Helix 37
AE1
C
551 563Right-handed alpha
Helix 38
AE2
C
563 575Right-handed alpha
Helix 39
AE3
C
587 607Right-handed alpha
Helix 40
AE4
C
627 637Right-handed alpha
Helix 41
AE5
C
640 654Right-handed alpha
Helix 42
AE6
C
657 669Right-handed alpha
Helix 43
AE7
C
672 700Right-handed alpha
Helix 44
AE8
C
704 714Right-handed alpha
Helix 45
AE9
D
425 429Right-handed 310
Helix 46
AF1
D
437 451Right-handed alpha
Helix 47
AF2
D
453 479Right-handed alpha
Helix 48
AF3
D
489 493Right-handed 310
Helix 49
AF4
D
495 515Right-handed alpha
Helix 50
AF5
D
516 518Right-handed 310
Helix 51
AF6
D
519 546Right-handed alpha
Helix 52
AF7
D
551 563Right-handed alpha
Helix 53
AF8
D
563 575Right-handed alpha
Helix 54
AF9
D
587 605Right-handed alpha
Helix 55
AG1
D
627 637Right-handed alpha
Helix 56
AG2
D
640 654Right-handed alpha
Helix 57
AG3
D
657 669Right-handed alpha
Helix 58
AG4
D
672 700Right-handed alpha
Helix 59
AG5
D
704 714Right-handed alpha
Helix 60
AG6
E
425 429Right-handed 310
Helix 61
AG7
E
437 451Right-handed alpha
Helix 62
AG8
E
453 479Right-handed alpha
Helix 63
AG9
E
489 493Right-handed 310
Helix 64
AH1
E
495 516Right-handed alpha
Helix 65
AH2
E
519 546Right-handed alpha
Helix 66
AH3
E
551 563Right-handed alpha
Helix 67
AH4
E
563 575Right-handed alpha
Helix 68
AH5
E
587 605Right-handed alpha
Helix 69
AH6
E
627 637Right-handed alpha
Helix 70
AH7
E
640 654Right-handed alpha
Helix 71
AH8
E
657 669Right-handed alpha
Helix 72
AH9
E
672 700Right-handed alpha
Helix 73
AI1
E
704 714Right-handed alpha
Helix 74
AI2
F
425 430Right-handed alpha
Helix 75
AI3
F
437 451Right-handed alpha
Helix 76
AI4
F
453 479Right-handed alpha
Helix 77
AI5
F
489 493Right-handed 310
Helix 78
AI6
F
496 515Right-handed alpha
Helix 79
AI7
F
516 518Right-handed 310
Helix 80
AI8
F
519 546Right-handed alpha
Helix 81
AI9
F
551 563Right-handed alpha
Helix 82
AJ1
F
563 575Right-handed alpha
Helix 83
AJ2
F
587 607Right-handed alpha
Helix 84
AJ3
F
627 637Right-handed alpha
Helix 85
AJ4
F
640 654Right-handed alpha
Helix 86
AJ5
F
657 669Right-handed alpha
Helix 87
AJ6
F
672 700Right-handed alpha
Helix 88
AJ7
F
704 714Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 9WYV.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
483 484first strand
Strand 2
B
487 488anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il