Analysis of interatomic Contacts of Structural Units in PDB entry:
9WZL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WZL entry

There are 2 chains in PDB entry 9WZL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 165ILE 420
B
 SER 165VAL 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9WZL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
174 179Right-handed alpha
Helix 2
AA2
A
195 212Right-handed alpha
Helix 3
AA3
A
226 233Right-handed alpha
Helix 4
AA4
A
259 275Right-handed alpha
Helix 5
AA5
A
285 293Right-handed alpha
Helix 6
AA6
A
306 329Right-handed alpha
Helix 7
AA7
A
344 351Right-handed alpha
Helix 8
AA8
A
379 392Right-handed alpha
Helix 9
AA9
B
174 179Right-handed alpha
Helix 10
AB1
B
195 212Right-handed alpha
Helix 11
AB2
B
226 233Right-handed alpha
Helix 12
AB3
B
259 275Right-handed alpha
Helix 13
AB4
B
285 293Right-handed alpha
Helix 14
AB5
B
306 329Right-handed alpha
Helix 15
AB6
B
344 351Right-handed alpha
Helix 16
AB7
B
379 392Right-handed alpha
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There are 4 sheets in PDB entry 9WZL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
217 222parallel
Strand 3
A
186 191parallel
Strand 4
A
240 244anti-parallel
Strand 5
A
252 254anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
334 340parallel
Strand 3
A
298 304parallel
Strand 4
A
360 365anti-parallel
Strand 5
A
370 373anti-parallel
Strand 6
A
398 399anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
217 222parallel
Strand 3
B
186 191parallel
Strand 4
B
240 244anti-parallel
Strand 5
B
252 253anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 282first strand
Strand 2
B
334 340parallel
Strand 3
B
298 304parallel
Strand 4
B
360 365anti-parallel
Strand 5
B
370 373anti-parallel
Strand 6
B
398 399anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il