Analysis of interatomic Contacts of Structural Units in PDB entry:
9WZQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WZQ entry

There is 1 chain in PDB entry 9WZQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 13ALA 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 9WZQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 35Right-handed alpha
Helix 2
AA2
A
49 58Right-handed alpha
Helix 3
AA3
A
69 74Right-handed alpha
Helix 4
AA4
A
89 98Right-handed alpha
Helix 5
AA5
A
104 113Right-handed alpha
Helix 6
AA6
A
125 140Right-handed alpha
Helix 7
AA7
A
153 158Right-handed 310
Helix 8
AA8
A
170 176Right-handed alpha
Helix 9
AA9
A
191 195Right-handed 310
Helix 10
AB1
A
200 209Right-handed alpha
Helix 11
AB2
A
210 213Right-handed 310
Helix 12
AB3
A
224 228Right-handed 310
Helix 13
AB4
A
229 234Right-handed 310
Helix 14
AB5
A
272 274Right-handed 310
Helix 15
AB6
A
277 295Right-handed alpha
Helix 16
AB7
A
298 309Right-handed alpha
Helix 17
AB8
A
335 348Right-handed alpha
Helix 18
AB9
A
366 369Right-handed 310
Helix 19
AC1
A
370 377Right-handed alpha
Helix 20
AC2
A
387 396Right-handed alpha
Helix 21
AC3
A
406 418Right-handed alpha
Helix 22
AC4
A
438 453Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9WZQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
39 43parallel
Strand 3
A
16 19parallel
Strand 4
A
78 81parallel
Strand 5
A
101 103parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
164 168parallel
Strand 3
A
117 121parallel
Strand 4
A
184 187parallel
Strand 5
A
218 221parallel
Strand 6
A
237 240parallel
Strand 7
A
249 255parallel
Strand 8
A
258 263anti-parallel
Strand 9
A
266 270anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 322first strand
Strand 2
A
325 329anti-parallel
Strand 3
A
423 426parallel
Strand 4
A
354 359parallel
Strand 5
A
378 384parallel
Strand 6
A
401 403parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il