Analysis of interatomic Contacts of Structural Units in PDB entry:
9X3J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9X3J entry

There are 9 chains in PDB entry 9X3J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 24	ALA 576
I	LEU 2	SER 126
M	SER 2	LEU 112
B	GLY 24	ALA 576
C	LEU 2	SER 126
D	SER 2	LEU 112
E	GLY 24	ALA 576
F	LEU 2	SER 126
G	SER 2	LEU 112

There are 21 helices in PDB entry 9X3J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	53	Right-handed 310
Helix 2	AA2	A	63	66	Right-handed 310
Helix 3	AA3	A	70	75	Right-handed alpha
Helix 4	AA4	A	179	187	Right-handed alpha
Helix 5	AA5	A	533	557	Right-handed alpha
Helix 6	AA6	A	564	576	Right-handed alpha
Helix 7	AA7	I	88	92	Right-handed 310
Helix 8	AA8	B	51	53	Right-handed 310
Helix 9	AA9	B	63	66	Right-handed 310
Helix 10	AB1	B	180	187	Right-handed alpha
Helix 11	AB2	B	533	557	Right-handed alpha
Helix 12	AB3	B	565	569	Right-handed alpha
Helix 13	AB4	B	569	576	Right-handed alpha
Helix 14	AB5	C	88	92	Right-handed 310
Helix 15	AB6	E	51	53	Right-handed 310
Helix 16	AB7	E	63	66	Right-handed 310
Helix 17	AB8	E	180	187	Right-handed alpha
Helix 18	AB9	E	533	557	Right-handed alpha
Helix 19	AC1	E	564	569	Right-handed alpha
Helix 20	AC2	E	569	576	Right-handed alpha
Helix 21	AC3	F	88	92	Right-handed 310

There are 35 sheets in PDB entry 9X3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	176	177	anti-parallel
Strand 3	A	30	34	parallel
Strand 4	A	470	474	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	169	173	anti-parallel
Strand 3	A	151	153	anti-parallel
Strand 4	A	157	159	anti-parallel
Strand 5	A	88	90	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	143	146	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	106	first strand
Strand 2	A	130	136	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	501	first strand
Strand 2	A	524	526	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	79	84	anti-parallel
Strand 4	I	69	70	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	79	84	anti-parallel
Strand 4	I	73	74	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	120	124	parallel
Strand 3	I	93	103	anti-parallel
Strand 4	I	35	41	anti-parallel
Strand 5	I	48	53	anti-parallel
Strand 6	I	59	61	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	120	124	parallel
Strand 3	I	93	103	anti-parallel
Strand 4	I	109	115	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	12	first strand
Strand 2	M	107	111	parallel
Strand 3	M	87	89	anti-parallel
Strand 4	M	37	40	anti-parallel
Strand 5	M	46	50	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	18	23	first strand
Strand 2	M	72	77	anti-parallel
Strand 3	M	64	69	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	91	93	first strand
Strand 2	M	101	103	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	176	177	anti-parallel
Strand 3	B	30	34	parallel
Strand 4	B	470	474	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	61	first strand
Strand 2	B	169	173	anti-parallel
Strand 3	B	151	153	anti-parallel
Strand 4	B	157	159	anti-parallel
Strand 5	B	88	90	anti-parallel
Strand 6	B	563	564	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	143	146	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	106	first strand
Strand 2	B	130	136	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	501	first strand
Strand 2	B	524	526	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	69	74	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	120	124	parallel
Strand 3	C	93	103	anti-parallel
Strand 4	C	35	41	anti-parallel
Strand 5	C	48	53	anti-parallel
Strand 6	C	59	61	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	120	124	parallel
Strand 3	C	93	103	anti-parallel
Strand 4	C	109	116	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	87	89	anti-parallel
Strand 4	D	37	40	anti-parallel
Strand 5	D	46	50	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	72	77	anti-parallel
Strand 3	D	64	69	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	93	first strand
Strand 2	D	101	103	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	56	first strand
Strand 2	E	176	177	anti-parallel
Strand 3	E	30	34	parallel
Strand 4	E	470	474	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	61	first strand
Strand 2	E	169	173	anti-parallel
Strand 3	E	151	153	anti-parallel
Strand 4	E	157	159	anti-parallel
Strand 5	E	88	90	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	81	first strand
Strand 2	E	143	146	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	106	first strand
Strand 2	E	130	136	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	499	501	first strand
Strand 2	E	524	526	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	79	84	anti-parallel
Strand 4	F	69	70	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	79	84	anti-parallel
Strand 4	F	73	74	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	120	124	parallel
Strand 3	F	93	103	anti-parallel
Strand 4	F	35	41	anti-parallel
Strand 5	F	48	53	anti-parallel
Strand 6	F	59	61	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	120	124	parallel
Strand 3	F	93	103	anti-parallel
Strand 4	F	109	116	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	12	first strand
Strand 2	G	107	111	parallel
Strand 3	G	87	89	anti-parallel
Strand 4	G	37	40	anti-parallel
Strand 5	G	47	50	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	23	first strand
Strand 2	G	72	77	anti-parallel
Strand 3	G	64	69	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	93	first strand
Strand 2	G	101	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9X3J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9X3J