Analysis of interatomic Contacts of Structural Units in PDB entry:
9X3Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9X3Q entry

There are 7 chains in PDB entry 9X3Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	SER 659
B	ASN 15	SER 659
C	THR 2	THR 911
D	ILE 4	ASN 130
E	MET 1	GLY 193
F	PHE 2	GLU 163
G	PHE 2	GLU 163

There are 57 helices in PDB entry 9X3Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	11	Right-handed 310
Helix 2	AA2	A	25	39	Right-handed alpha
Helix 3	AA3	A	50	79	Right-handed alpha
Helix 4	AA4	A	85	97	Right-handed alpha
Helix 5	AA5	A	193	197	Right-handed 310
Helix 6	AA6	A	321	332	Right-handed alpha
Helix 7	AA7	A	341	353	Right-handed alpha
Helix 8	AA8	A	385	399	Right-handed alpha
Helix 9	AA9	A	432	452	Right-handed alpha
Helix 10	AB1	A	461	469	Right-handed alpha
Helix 11	AB2	A	605	610	Right-handed 310
Helix 12	AB3	A	647	651	Right-handed 310
Helix 13	AB4	B	25	38	Right-handed alpha
Helix 14	AB5	B	51	76	Right-handed alpha
Helix 15	AB6	B	85	96	Right-handed alpha
Helix 16	AB7	B	321	331	Right-handed alpha
Helix 17	AB8	B	341	354	Right-handed alpha
Helix 18	AB9	B	385	398	Right-handed alpha
Helix 19	AC1	B	427	429	Right-handed 310
Helix 20	AC2	B	432	452	Right-handed alpha
Helix 21	AC3	B	460	472	Right-handed alpha
Helix 22	AC4	B	606	609	Right-handed 310
Helix 23	AC5	B	647	649	Right-handed 310
Helix 24	AC6	C	119	127	Right-handed alpha
Helix 25	AC7	C	159	167	Right-handed 310
Helix 26	AC8	C	645	652	Right-handed 310
Helix 27	AC9	C	662	677	Right-handed alpha
Helix 28	AD1	C	681	688	Right-handed alpha
Helix 29	AD2	C	690	694	Right-handed 310
Helix 30	AD3	C	701	706	Right-handed 310
Helix 31	AD4	C	707	712	Right-handed alpha
Helix 32	AD5	C	716	731	Right-handed alpha
Helix 33	AD6	C	740	752	Right-handed alpha
Helix 34	AD7	C	778	783	Right-handed 310
Helix 35	AD8	C	851	856	Right-handed alpha
Helix 36	AD9	C	871	874	Right-handed 310
Helix 37	AE1	C	875	883	Right-handed alpha
Helix 38	AE2	D	28	42	Right-handed alpha
Helix 39	AE3	D	57	61	Right-handed 310
Helix 40	AE4	D	69	85	Right-handed alpha
Helix 41	AE5	D	99	102	Right-handed 310
Helix 42	AE6	D	115	130	Right-handed alpha
Helix 43	AE7	E	1	5	Right-handed 310
Helix 44	AE8	E	31	40	Right-handed alpha
Helix 45	AE9	E	55	65	Right-handed alpha
Helix 46	AF1	E	69	77	Right-handed alpha
Helix 47	AF2	E	89	101	Right-handed alpha
Helix 48	AF3	E	154	166	Right-handed alpha
Helix 49	AF4	E	173	191	Right-handed alpha
Helix 50	AF5	F	2	10	Right-handed 310
Helix 51	AF6	F	31	34	Right-handed 310
Helix 52	AF7	F	79	93	Right-handed alpha
Helix 53	AF8	F	103	108	Right-handed alpha
Helix 54	AF9	G	4	9	Right-handed alpha
Helix 55	AG1	G	31	35	Right-handed alpha
Helix 56	AG2	G	79	93	Right-handed alpha
Helix 57	AG3	G	103	108	Right-handed alpha

There are 39 sheets in PDB entry 9X3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	288	first strand
Strand 2	A	130	135	anti-parallel
Strand 3	A	139	147	anti-parallel
Strand 4	A	164	169	anti-parallel
Strand 5	A	106	115	anti-parallel
Strand 6	A	296	302	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	288	first strand
Strand 2	A	130	135	anti-parallel
Strand 3	A	139	147	anti-parallel
Strand 4	A	164	169	anti-parallel
Strand 5	A	106	115	anti-parallel
Strand 6	A	314	315	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	125	first strand
Strand 2	A	151	154	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	178	first strand
Strand 2	A	267	274	anti-parallel
Strand 3	A	198	201	anti-parallel
Strand 4	A	204	208	anti-parallel
Strand 5	A	223	228	parallel
Strand 6	A	234	237	anti-parallel
Strand 7	A	185	187	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	364	first strand
Strand 2	A	371	376	anti-parallel
Strand 3	A	405	409	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	418	first strand
Strand 2	A	482	488	anti-parallel
Strand 3	A	621	625	anti-parallel
Strand 4	A	511	512	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	479	first strand
Strand 2	A	421	425	anti-parallel
Strand 3	A	654	658	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	631	632	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	596	first strand
Strand 2	A	601	603	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	286	first strand
Strand 2	B	130	134	anti-parallel
Strand 3	B	143	147	anti-parallel
Strand 4	B	164	169	anti-parallel
Strand 5	B	107	116	anti-parallel
Strand 6	B	295	301	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	125	first strand
Strand 2	B	151	154	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	178	first strand
Strand 2	B	267	274	anti-parallel
Strand 3	B	192	201	anti-parallel
Strand 4	B	204	206	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	187	first strand
Strand 2	B	234	238	anti-parallel
Strand 3	B	224	228	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	245	first strand
Strand 2	B	252	254	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	363	first strand
Strand 2	B	371	378	anti-parallel
Strand 3	B	405	408	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	479	first strand
Strand 2	B	413	425	anti-parallel
Strand 3	B	639	641	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	621	623	first strand
Strand 2	B	482	488	anti-parallel
Strand 3	B	413	425	anti-parallel
Strand 4	B	651	658	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	500	first strand
Strand 2	B	601	604	anti-parallel
Strand 3	B	591	596	anti-parallel
Strand 4	B	550	554	anti-parallel
Strand 5	B	541	542	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	15	first strand
Strand 2	C	21	25	anti-parallel
Strand 3	C	66	69	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	62	first strand
Strand 2	C	33	39	anti-parallel
Strand 3	C	81	85	anti-parallel
Strand 4	C	95	96	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	100	101	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	594	598	anti-parallel
Strand 3	C	585	589	anti-parallel
Strand 4	C	142	146	anti-parallel
Strand 5	C	543	546	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	539	540	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	558	562	first strand
Strand 2	C	565	569	anti-parallel
Strand 3	C	617	621	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	576	first strand
Strand 2	C	607	610	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	759	first strand
Strand 2	C	864	868	anti-parallel
Strand 3	C	890	894	parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	800	801	first strand
Strand 2	C	808	811	anti-parallel
Strand 3	C	770	773	anti-parallel
Strand 4	C	835	838	anti-parallel
Strand 5	C	825	828	anti-parallel
Strand 6	C	785	787	anti-parallel
Strand 7	C	791	794	anti-parallel
Strand 8	C	817	818	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	25	26	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	98	first strand
Strand 2	D	103	109	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	23	25	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	49	first strand
Strand 2	E	168	171	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	120	first strand
Strand 2	E	111	113	anti-parallel
Strand 3	E	151	153	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	124	first strand
Strand 2	E	133	135	anti-parallel
Strand 3	E	144	146	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	25	first strand
Strand 2	F	109	116	anti-parallel
Strand 3	F	123	138	anti-parallel
Strand 4	F	152	158	anti-parallel
Strand 5	F	69	74	anti-parallel
Strand 6	F	36	39	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	25	first strand
Strand 2	F	109	116	anti-parallel
Strand 3	F	123	138	anti-parallel
Strand 4	F	161	163	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	52	first strand
Strand 2	F	57	65	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	24	first strand
Strand 2	G	109	116	anti-parallel
Strand 3	G	123	136	anti-parallel
Strand 4	G	152	158	anti-parallel
Strand 5	G	69	74	anti-parallel
Strand 6	G	36	39	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	24	first strand
Strand 2	G	109	116	anti-parallel
Strand 3	G	123	136	anti-parallel
Strand 4	G	161	162	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	52	first strand
Strand 2	G	57	66	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9X3Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
9X3Q