Analysis of interatomic Contacts of Structural Units in PDB entry:
9X3Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9X3Z entry

There are 6 chains in PDB entry 9X3Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ILE 32	SER 285
A	LEU 5	PHE 361
B	GLN 11	ASN 345
S	VAL 2	LEU 245
G	SER 8	ARG 62
L	PHE 11	GLN 16

There are 28 helices in PDB entry 9X3Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	33	60	Right-handed alpha
Helix 2	AA2	R	64	93	Right-handed alpha
Helix 3	AA3	R	101	136	Right-handed alpha
Helix 4	AA4	R	136	143	Right-handed alpha
Helix 5	AA5	R	147	171	Right-handed alpha
Helix 6	AA6	R	182	197	Right-handed alpha
Helix 7	AA7	R	198	216	Right-handed alpha
Helix 8	AA8	R	226	241	Right-handed alpha
Helix 9	AA9	R	241	255	Right-handed alpha
Helix 10	AB1	R	260	281	Right-handed alpha
Helix 11	AB2	A	6	32	Right-handed alpha
Helix 12	AB3	A	45	53	Right-handed alpha
Helix 13	AB4	A	210	216	Right-handed 310
Helix 14	AB5	A	232	245	Right-handed alpha
Helix 15	AB6	A	246	250	Right-handed 310
Helix 16	AB7	A	260	268	Right-handed alpha
Helix 17	AB8	A	298	318	Right-handed alpha
Helix 18	AB9	A	337	358	Right-handed alpha
Helix 19	AC1	B	12	31	Right-handed alpha
Helix 20	AC2	B	34	39	Right-handed alpha
Helix 21	AC3	S	28	32	Right-handed 310
Helix 22	AC4	S	62	65	Right-handed 310
Helix 23	AC5	S	87	91	Right-handed 310
Helix 24	AC6	S	220	224	Right-handed 310
Helix 25	AC7	G	9	24	Right-handed alpha
Helix 26	AC8	G	29	44	Right-handed alpha
Helix 27	AC9	G	45	48	Right-handed 310
Helix 28	AD1	G	55	59	Right-handed 310

There are 14 sheets in PDB entry 9X3Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	191	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	33	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	254	259	parallel
Strand 6	A	326	330	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	56	first strand
Strand 2	B	341	345	anti-parallel
Strand 3	B	332	336	anti-parallel
Strand 4	B	320	325	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	74	79	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	94	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	110	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	126	130	anti-parallel
Strand 4	B	139	144	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	180	185	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	197	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	223	227	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	239	first strand
Strand 2	B	245	250	anti-parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	264	269	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	299	303	anti-parallel
Strand 4	B	309	313	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	17	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	110	111	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	140	141	first strand
Strand 2	S	155	161	anti-parallel
Strand 3	S	211	216	anti-parallel
Strand 4	S	203	207	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	194	195	first strand
Strand 2	S	186	190	anti-parallel
Strand 3	S	174	179	anti-parallel
Strand 4	S	226	231	anti-parallel
Strand 5	S	238	239	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	194	195	first strand
Strand 2	S	186	190	anti-parallel
Strand 3	S	174	179	anti-parallel
Strand 4	S	226	231	anti-parallel
Strand 5	S	243	244	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9X3Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9X3Z