Analysis of interatomic Contacts of Structural Units in PDB entry:
9X47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9X47 entry

There are 2 chains in PDB entry 9X47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LYS 573
B
 SER 8GLN 577
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 9X47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 8Right-handed 310
Helix 2
AA2
A
12 42Right-handed alpha
Helix 3
AA3
A
42 47Right-handed alpha
Helix 4
AA4
A
48 98Right-handed alpha
Helix 5
AA5
A
100 108Right-handed alpha
Helix 6
AA6
A
108 134Right-handed alpha
Helix 7
AA7
A
136 152Right-handed alpha
Helix 8
AA8
A
155 201Right-handed alpha
Helix 9
AA9
A
201 208Right-handed alpha
Helix 10
AB1
A
210 237Right-handed alpha
Helix 11
AB2
A
238 265Right-handed alpha
Helix 12
AB3
A
268 280Right-handed alpha
Helix 13
AB4
A
281 311Right-handed alpha
Helix 14
AB5
A
372 381Right-handed alpha
Helix 15
AB6
A
402 409Right-handed alpha
Helix 16
AB7
A
424 430Right-handed alpha
Helix 17
AB8
A
437 448Right-handed alpha
Helix 18
AB9
A
450 457Right-handed alpha
Helix 19
AC1
A
459 462Right-handed 310
Helix 20
AC2
A
473 488Right-handed alpha
Helix 21
AC3
A
503 518Right-handed alpha
Helix 22
AC4
A
530 534Right-handed 310
Helix 23
AC5
A
552 560Right-handed alpha
Helix 24
AC6
A
560 572Right-handed alpha
Helix 25
AC7
B
9 18Right-handed alpha
Helix 26
AC8
B
20 51Right-handed alpha
Helix 27
AC9
B
56 106Right-handed alpha
Helix 28
AD1
B
109 116Right-handed alpha
Helix 29
AD2
B
117 161Right-handed alpha
Helix 30
AD3
B
161 207Right-handed alpha
Helix 31
AD4
B
208 209Right-handed 310
Helix 32
AD5
B
210 211Right-handed 310
Helix 33
AD6
B
212 217Right-handed alpha
Helix 34
AD7
B
219 247Right-handed alpha
Helix 35
AD8
B
247 273Right-handed alpha
Helix 36
AD9
B
278 321Right-handed alpha
Helix 37
AE1
B
382 389Right-handed alpha
Helix 38
AE2
B
407 409Right-handed 310
Helix 39
AE3
B
410 417Right-handed alpha
Helix 40
AE4
B
431 437Right-handed alpha
Helix 41
AE5
B
444 455Right-handed alpha
Helix 42
AE6
B
457 462Right-handed alpha
Helix 43
AE7
B
466 470Right-handed 310
Helix 44
AE8
B
472 477Right-handed 310
Helix 45
AE9
B
480 495Right-handed alpha
Helix 46
AF1
B
510 525Right-handed alpha
Helix 47
AF2
B
536 542Right-handed alpha
Helix 48
AF3
B
559 567Right-handed alpha
Helix 49
AF4
B
568 576Right-handed alpha
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There are 5 sheets in PDB entry 9X47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 355first strand
Strand 2
A
333 340anti-parallel
Strand 3
A
388 393anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 413first strand
Strand 2
A
492 496parallel
Strand 3
A
524 526parallel
Strand 4
A
363 367parallel
Strand 5
A
539 543parallel
Strand 6
A
546 551anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
464 465anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 364first strand
Strand 2
B
342 349anti-parallel
Strand 3
B
396 401anti-parallel
Strand 4
B
404 405anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
418 420first strand
Strand 2
B
499 503parallel
Strand 3
B
530 533parallel
Strand 4
B
371 374parallel
Strand 5
B
545 550parallel
Strand 6
B
553 558anti-parallel
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