Analysis of interatomic Contacts of Structural Units in PDB entry:
9X49


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9X49 entry

There are 2 chains in PDB entry 9X49 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LYS 573
B
 SER 8GLN 577
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 9X49. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 9Right-handed 310
Helix 2
AA2
A
11 42Right-handed alpha
Helix 3
AA3
A
42 47Right-handed alpha
Helix 4
AA4
A
48 98Right-handed alpha
Helix 5
AA5
A
100 108Right-handed alpha
Helix 6
AA6
A
108 133Right-handed alpha
Helix 7
AA7
A
136 152Right-handed alpha
Helix 8
AA8
A
154 201Right-handed alpha
Helix 9
AA9
A
201 208Right-handed alpha
Helix 10
AB1
A
210 237Right-handed alpha
Helix 11
AB2
A
238 264Right-handed alpha
Helix 12
AB3
A
268 281Right-handed alpha
Helix 13
AB4
A
282 311Right-handed alpha
Helix 14
AB5
A
372 381Right-handed alpha
Helix 15
AB6
A
402 409Right-handed alpha
Helix 16
AB7
A
424 429Right-handed alpha
Helix 17
AB8
A
437 448Right-handed alpha
Helix 18
AB9
A
450 456Right-handed alpha
Helix 19
AC1
A
459 462Right-handed 310
Helix 20
AC2
A
473 488Right-handed alpha
Helix 21
AC3
A
503 518Right-handed alpha
Helix 22
AC4
A
552 559Right-handed alpha
Helix 23
AC5
A
560 572Right-handed alpha
Helix 24
AC6
B
9 19Right-handed alpha
Helix 25
AC7
B
20 51Right-handed alpha
Helix 26
AC8
B
52 54Right-handed 310
Helix 27
AC9
B
56 108Right-handed alpha
Helix 28
AD1
B
109 116Right-handed alpha
Helix 29
AD2
B
117 161Right-handed alpha
Helix 30
AD3
B
161 209Right-handed alpha
Helix 31
AD4
B
212 218Right-handed alpha
Helix 32
AD5
B
219 247Right-handed alpha
Helix 33
AD6
B
247 273Right-handed alpha
Helix 34
AD7
B
278 321Right-handed alpha
Helix 35
AD8
B
382 389Right-handed alpha
Helix 36
AD9
B
410 417Right-handed alpha
Helix 37
AE1
B
431 437Right-handed alpha
Helix 38
AE2
B
444 455Right-handed alpha
Helix 39
AE3
B
457 464Right-handed alpha
Helix 40
AE4
B
466 470Right-handed 310
Helix 41
AE5
B
472 477Right-handed 310
Helix 42
AE6
B
480 495Right-handed alpha
Helix 43
AE7
B
510 525Right-handed alpha
Helix 44
AE8
B
536 542Right-handed alpha
Helix 45
AE9
B
559 567Right-handed alpha
Helix 46
AF1
B
568 576Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9X49. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 358first strand
Strand 2
A
331 340anti-parallel
Strand 3
A
388 390anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 413first strand
Strand 2
A
492 496parallel
Strand 3
A
522 526parallel
Strand 4
A
362 364parallel
Strand 5
A
538 542parallel
Strand 6
A
547 551anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
464 465anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 364first strand
Strand 2
B
342 349anti-parallel
Strand 3
B
396 401anti-parallel
Strand 4
B
404 405anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
418 420first strand
Strand 2
B
499 504parallel
Strand 3
B
529 534parallel
Strand 4
B
371 372parallel
Strand 5
B
545 549parallel
Strand 6
B
554 558anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il