Analysis of interatomic Contacts of Structural Units in PDB entry:
9X58

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9X58 entry

There are 6 chains in PDB entry 9X58 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 3	ILE 379
B	PHE 3	ILE 379
L	UNK 1	UNK 216
D	UNK 1	UNK 216
C	UNK 2	UNK 218
H	UNK 2	UNK 218

There are 31 helices in PDB entry 9X58. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	33	Right-handed alpha
Helix 2	AA2	A	55	69	Right-handed alpha
Helix 3	AA3	A	82	90	Right-handed alpha
Helix 4	AA4	A	118	130	Right-handed alpha
Helix 5	AA5	A	144	155	Right-handed alpha
Helix 6	AA6	A	170	184	Right-handed alpha
Helix 7	AA7	A	194	208	Right-handed alpha
Helix 8	AA8	A	230	236	Right-handed alpha
Helix 9	AA9	A	251	261	Right-handed alpha
Helix 10	AB1	A	276	298	Right-handed alpha
Helix 11	AB2	A	319	321	Right-handed 310
Helix 12	AB3	A	322	330	Right-handed alpha
Helix 13	AB4	B	18	33	Right-handed alpha
Helix 14	AB5	B	55	69	Right-handed alpha
Helix 15	AB6	B	82	90	Right-handed alpha
Helix 16	AB7	B	118	130	Right-handed alpha
Helix 17	AB8	B	144	158	Right-handed alpha
Helix 18	AB9	B	170	184	Right-handed alpha
Helix 19	AC1	B	194	208	Right-handed alpha
Helix 20	AC2	B	230	236	Right-handed alpha
Helix 21	AC3	B	251	261	Right-handed alpha
Helix 22	AC4	B	276	298	Right-handed alpha
Helix 23	AC5	B	321	330	Right-handed alpha
Helix 24	AC6	L	123	129	Right-handed alpha
Helix 25	AC7	L	184	191	Right-handed alpha
Helix 26	AC8	D	123	129	Right-handed alpha
Helix 27	AC9	D	184	191	Right-handed alpha
Helix 28	AD1	C	131	136	Right-handed alpha
Helix 29	AD2	C	191	196	Right-handed alpha
Helix 30	AD3	H	131	136	Right-handed alpha
Helix 31	AD4	H	191	196	Right-handed alpha

There are 30 sheets in PDB entry 9X58. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	8	12	parallel
Strand 3	A	73	76	parallel
Strand 4	A	96	99	parallel
Strand 5	A	111	113	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	137	138	parallel
Strand 3	A	191	192	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	238	243	parallel
Strand 3	A	353	359	anti-parallel
Strand 4	A	364	371	anti-parallel
Strand 5	A	376	378	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	339	342	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	8	12	parallel
Strand 3	B	73	76	parallel
Strand 4	B	96	99	parallel
Strand 5	B	111	113	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	137	138	parallel
Strand 3	B	191	192	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	238	243	parallel
Strand 3	B	353	359	anti-parallel
Strand 4	B	364	371	anti-parallel
Strand 5	B	376	378	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	339	342	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	75	anti-parallel
Strand 4	L	62	66	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	120	first strand
Strand 2	L	132	141	anti-parallel
Strand 3	L	175	183	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	156	157	first strand
Strand 2	L	147	152	anti-parallel
Strand 3	L	193	199	anti-parallel
Strand 4	L	207	212	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	71	75	anti-parallel
Strand 4	D	62	66	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	120	first strand
Strand 2	D	132	141	anti-parallel
Strand 3	D	175	183	anti-parallel
Strand 4	D	161	165	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	157	first strand
Strand 2	D	147	152	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	207	212	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	71	73	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	37	first strand
Strand 2	C	98	100	anti-parallel
Strand 3	C	104	106	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	40	41	anti-parallel
Strand 3	C	93	95	anti-parallel
Strand 4	C	111	113	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	60	61	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	128	first strand
Strand 2	C	139	149	anti-parallel
Strand 3	C	180	189	anti-parallel
Strand 4	C	167	169	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	128	first strand
Strand 2	C	139	149	anti-parallel
Strand 3	C	180	189	anti-parallel
Strand 4	C	173	174	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	199	204	anti-parallel
Strand 3	C	211	214	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	71	73	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	37	first strand
Strand 2	H	98	100	anti-parallel
Strand 3	H	104	106	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	48	first strand
Strand 2	H	40	41	anti-parallel
Strand 3	H	93	95	anti-parallel
Strand 4	H	111	113	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	52	first strand
Strand 2	H	60	61	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	167	169	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	173	174	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	158	first strand
Strand 2	H	199	204	anti-parallel
Strand 3	H	211	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9X58

Analysis of interatomic Contacts of Structural Units in PDB entry:
9X58