Analysis of interatomic Contacts of Structural Units in PDB entry:
9X5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9X5F entry

There are 2 chains in PDB entry 9X5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 11ASN 347
A
 MET 60LEU 587
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9X5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
17 32Right-handed alpha
Helix 2
AA2
B
42 50Right-handed alpha
Helix 3
AA3
B
94 98Right-handed 310
Helix 4
AA4
B
124 139Right-handed alpha
Helix 5
AA5
B
156 172Right-handed alpha
Helix 6
AA6
B
193 207Right-handed alpha
Helix 7
AA7
B
230 236Right-handed alpha
Helix 8
AA8
B
243 255Right-handed alpha
Helix 9
AA9
B
296 310Right-handed alpha
Helix 10
AB1
B
332 347Right-handed alpha
Helix 11
AB2
A
61 67Right-handed alpha
Helix 12
AB3
A
76 93Right-handed alpha
Helix 13
AB4
A
94 104Right-handed alpha
Helix 14
AB5
A
112 124Right-handed alpha
Helix 15
AB6
A
209 228Right-handed alpha
Helix 16
AB7
A
230 246Right-handed alpha
Helix 17
AB8
A
247 249Right-handed 310
Helix 18
AB9
A
250 268Right-handed alpha
Helix 19
AC1
A
276 291Right-handed alpha
Helix 20
AC2
A
292 309Right-handed alpha
Helix 21
AC3
A
327 338Right-handed alpha
Helix 22
AC4
A
359 376Right-handed alpha
Helix 23
AC5
A
388 392Right-handed 310
Helix 24
AC6
A
413 418Right-handed 310
Helix 25
AC7
A
421 434Right-handed alpha
Helix 26
AC8
A
451 472Right-handed alpha
Helix 27
AC9
A
494 510Right-handed alpha
Helix 28
AD1
A
512 516Right-handed 310
Helix 29
AD2
A
522 534Right-handed alpha
Helix 30
AD3
A
542 555Right-handed alpha
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There are 3 sheets in PDB entry 9X5F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 319first strand
Strand 2
B
285 291parallel
Strand 3
B
216 220parallel
Strand 4
B
185 189parallel
Strand 5
B
108 112parallel
Strand 6
B
141 145parallel
Strand 7
B
76 82anti-parallel
Strand 8
B
63 69anti-parallel
Strand 9
A
204 206parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 385first strand
Strand 2
A
344 351parallel
Strand 3
A
314 319parallel
Strand 4
A
404 410parallel
Strand 5
A
437 443parallel
Strand 6
A
577 586anti-parallel
Strand 7
A
536 538anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 385first strand
Strand 2
A
344 351parallel
Strand 3
A
314 319parallel
Strand 4
A
404 410parallel
Strand 5
A
437 443parallel
Strand 6
A
577 586anti-parallel
Strand 7
A
569 574anti-parallel
Strand 8
A
561 566anti-parallel
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