Analysis of interatomic Contacts of Structural Units in PDB entry:
9X5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9X5Y entry

There are 9 chains in PDB entry 9X5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	THR 5	PRO 340
I	TRP 368	ILE 480
J	GLU 1	SER 128
K	GLU 1	LYS 127
A	THR 5	PRO 340
B	TRP 368	ILE 480
C	GLU 1	SER 128
D	GLU 1	LYS 127
E	THR 5	THR 5

There are 31 helices in PDB entry 9X5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	61	68	Right-handed alpha
Helix 2	AA2	G	98	102	Right-handed 310
Helix 3	AA3	G	103	105	Right-handed 310
Helix 4	AA4	G	106	112	Right-handed alpha
Helix 5	AA5	G	197	206	Right-handed alpha
Helix 6	AA6	I	387	404	Right-handed alpha
Helix 7	AA7	I	421	472	Right-handed alpha
Helix 8	AA8	J	29	37	Right-handed 310
Helix 9	AA9	K	30	37	Right-handed 310
Helix 10	AB1	K	95	99	Right-handed 310
Helix 11	AB2	A	61	67	Right-handed alpha
Helix 12	AB3	A	98	102	Right-handed 310
Helix 13	AB4	A	103	105	Right-handed 310
Helix 14	AB5	A	106	112	Right-handed alpha
Helix 15	AB6	A	197	206	Right-handed alpha
Helix 16	AB7	B	387	403	Right-handed alpha
Helix 17	AB8	B	421	472	Right-handed alpha
Helix 18	AB9	C	29	37	Right-handed 310
Helix 19	AC1	C	95	99	Right-handed 310
Helix 20	AC2	D	30	37	Right-handed 310
Helix 21	AC3	D	95	99	Right-handed 310
Helix 22	AC4	E	61	67	Right-handed alpha
Helix 23	AC5	E	98	102	Right-handed 310
Helix 24	AC6	E	103	105	Right-handed 310
Helix 25	AC7	E	106	112	Right-handed alpha
Helix 26	AC8	E	197	206	Right-handed alpha
Helix 27	AC9	F	387	404	Right-handed alpha
Helix 28	AD1	F	421	473	Right-handed alpha
Helix 29	AD2	H	29	37	Right-handed 310
Helix 30	AD3	L	30	37	Right-handed 310
Helix 31	AD4	L	95	99	Right-handed 310

There are 45 sheets in PDB entry 9X5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	17	first strand
Strand 2	G	23	26	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	31	first strand
Strand 2	G	330	332	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	34	first strand
Strand 2	G	309	310	parallel
Strand 3	G	323	324	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	44	first strand
Strand 2	G	292	293	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	50	first strand
Strand 2	G	81	84	parallel
Strand 3	G	281	284	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	119	first strand
Strand 2	G	274	277	anti-parallel
Strand 3	G	186	195	anti-parallel
Strand 4	G	267	270	anti-parallel
Strand 5	G	156	161	anti-parallel
Strand 6	G	135	138	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	119	first strand
Strand 2	G	274	277	anti-parallel
Strand 3	G	186	195	anti-parallel
Strand 4	G	245	253	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	173	177	first strand
Strand 2	G	259	263	anti-parallel
Strand 3	G	212	217	anti-parallel
Strand 4	G	220	225	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	301	303	first strand
Strand 2	G	295	297	anti-parallel
Strand 3	G	317	319	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	26	anti-parallel
Strand 3	J	86	92	anti-parallel
Strand 4	J	76	81	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	12	13	first strand
Strand 2	J	122	126	parallel
Strand 3	J	100	107	anti-parallel
Strand 4	J	39	44	anti-parallel
Strand 5	J	50	56	anti-parallel
Strand 6	J	65	67	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	12	13	first strand
Strand 2	J	122	126	parallel
Strand 3	J	100	107	anti-parallel
Strand 4	J	115	118	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	86	91	anti-parallel
Strand 4	K	76	83	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	13	first strand
Strand 2	K	123	126	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	66	67	first strand
Strand 2	K	50	55	anti-parallel
Strand 3	K	39	44	anti-parallel
Strand 4	K	101	106	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	23	26	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	330	332	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	309	310	parallel
Strand 3	A	323	324	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	292	293	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	81	84	parallel
Strand 3	A	281	284	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	274	277	anti-parallel
Strand 3	A	186	195	anti-parallel
Strand 4	A	267	270	anti-parallel
Strand 5	A	156	161	anti-parallel
Strand 6	A	135	138	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	274	277	anti-parallel
Strand 3	A	186	195	anti-parallel
Strand 4	A	245	253	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	177	first strand
Strand 2	A	259	263	anti-parallel
Strand 3	A	212	217	anti-parallel
Strand 4	A	220	225	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	295	297	anti-parallel
Strand 3	A	317	319	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	26	anti-parallel
Strand 3	C	86	92	anti-parallel
Strand 4	C	76	81	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	122	126	parallel
Strand 3	C	100	107	anti-parallel
Strand 4	C	39	44	anti-parallel
Strand 5	C	50	56	anti-parallel
Strand 6	C	65	67	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	122	126	parallel
Strand 3	C	100	107	anti-parallel
Strand 4	C	115	118	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	76	83	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	123	126	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	50	55	anti-parallel
Strand 3	D	39	44	anti-parallel
Strand 4	D	101	106	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	17	first strand
Strand 2	E	23	26	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	330	332	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	309	310	parallel
Strand 3	E	323	324	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	44	first strand
Strand 2	E	292	293	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	50	first strand
Strand 2	E	81	84	parallel
Strand 3	E	281	284	parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	119	first strand
Strand 2	E	274	277	anti-parallel
Strand 3	E	186	195	anti-parallel
Strand 4	E	267	270	anti-parallel
Strand 5	E	156	161	anti-parallel
Strand 6	E	135	138	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	119	first strand
Strand 2	E	274	277	anti-parallel
Strand 3	E	186	195	anti-parallel
Strand 4	E	245	253	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	177	first strand
Strand 2	E	259	263	anti-parallel
Strand 3	E	212	217	anti-parallel
Strand 4	E	220	225	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	303	first strand
Strand 2	E	295	297	anti-parallel
Strand 3	E	317	319	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	26	anti-parallel
Strand 3	H	86	92	anti-parallel
Strand 4	H	76	81	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	122	126	parallel
Strand 3	H	100	107	anti-parallel
Strand 4	H	39	44	anti-parallel
Strand 5	H	50	56	anti-parallel
Strand 6	H	65	67	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	122	126	parallel
Strand 3	H	100	107	anti-parallel
Strand 4	H	115	118	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	76	83	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	123	126	parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	66	67	first strand
Strand 2	L	50	55	anti-parallel
Strand 3	L	39	44	anti-parallel
Strand 4	L	101	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9X5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
9X5Y