Analysis of interatomic Contacts of Structural Units in PDB entry:
9X6W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9X6W entry

There are 8 chains in PDB entry 9X6W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 91	SER 307
B	ALA 93	MET 305
C	ASN 91	MET 305
D	ASN 91	GLU 306
E	ASN 91	GLU 306
F	ASN 91	SER 303
G	ASN 91	GLU 304
H	ASN 91	MET 305

There are 76 helices in PDB entry 9X6W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	111	Right-handed alpha
Helix 2	AA2	A	111	119	Right-handed alpha
Helix 3	AA3	A	136	143	Right-handed alpha
Helix 4	AA4	A	154	156	Right-handed 310
Helix 5	AA5	A	186	192	Right-handed alpha
Helix 6	AA6	A	206	215	Right-handed alpha
Helix 7	AA7	A	228	230	Right-handed 310
Helix 8	AA8	A	231	237	Right-handed alpha
Helix 9	AA9	A	247	253	Right-handed alpha
Helix 10	AB1	A	278	282	Right-handed 310
Helix 11	AB2	A	284	305	Right-handed alpha
Helix 12	AB3	B	104	111	Right-handed alpha
Helix 13	AB4	B	111	123	Right-handed alpha
Helix 14	AB5	B	136	143	Right-handed alpha
Helix 15	AB6	B	154	156	Right-handed 310
Helix 16	AB7	B	186	192	Right-handed alpha
Helix 17	AB8	B	231	237	Right-handed alpha
Helix 18	AB9	B	247	253	Right-handed alpha
Helix 19	AC1	B	278	282	Right-handed 310
Helix 20	AC2	B	284	305	Right-handed alpha
Helix 21	AC3	C	91	95	Right-handed 310
Helix 22	AC4	C	104	111	Right-handed alpha
Helix 23	AC5	C	111	123	Right-handed alpha
Helix 24	AC6	C	137	144	Right-handed alpha
Helix 25	AC7	C	186	191	Right-handed alpha
Helix 26	AC8	C	205	215	Right-handed alpha
Helix 27	AC9	C	231	237	Right-handed alpha
Helix 28	AD1	C	247	253	Right-handed alpha
Helix 29	AD2	C	284	304	Right-handed alpha
Helix 30	AD3	D	104	111	Right-handed alpha
Helix 31	AD4	D	111	123	Right-handed alpha
Helix 32	AD5	D	137	143	Right-handed alpha
Helix 33	AD6	D	154	156	Right-handed 310
Helix 34	AD7	D	186	193	Right-handed alpha
Helix 35	AD8	D	205	213	Right-handed alpha
Helix 36	AD9	D	231	237	Right-handed alpha
Helix 37	AE1	D	247	253	Right-handed alpha
Helix 38	AE2	D	278	282	Right-handed 310
Helix 39	AE3	D	284	305	Right-handed alpha
Helix 40	AE4	E	104	111	Right-handed alpha
Helix 41	AE5	E	111	123	Right-handed alpha
Helix 42	AE6	E	136	141	Right-handed alpha
Helix 43	AE7	E	154	156	Right-handed 310
Helix 44	AE8	E	186	191	Right-handed alpha
Helix 45	AE9	E	205	214	Right-handed alpha
Helix 46	AF1	E	231	237	Right-handed alpha
Helix 47	AF2	E	247	253	Right-handed alpha
Helix 48	AF3	E	278	282	Right-handed 310
Helix 49	AF4	E	284	306	Right-handed alpha
Helix 50	AF5	F	91	95	Right-handed 310
Helix 51	AF6	F	104	111	Right-handed alpha
Helix 52	AF7	F	111	123	Right-handed alpha
Helix 53	AF8	F	137	144	Right-handed alpha
Helix 54	AF9	F	154	156	Right-handed 310
Helix 55	AG1	F	189	193	Right-handed 310
Helix 56	AG2	F	205	216	Right-handed alpha
Helix 57	AG3	F	231	237	Right-handed alpha
Helix 58	AG4	F	247	254	Right-handed alpha
Helix 59	AG5	F	284	303	Right-handed alpha
Helix 60	AG6	G	104	111	Right-handed alpha
Helix 61	AG7	G	111	123	Right-handed alpha
Helix 62	AG8	G	136	143	Right-handed alpha
Helix 63	AG9	G	186	193	Right-handed alpha
Helix 64	AH1	G	206	217	Right-handed alpha
Helix 65	AH2	G	231	237	Right-handed alpha
Helix 66	AH3	G	247	253	Right-handed alpha
Helix 67	AH4	G	286	303	Right-handed alpha
Helix 68	AH5	H	91	95	Right-handed 310
Helix 69	AH6	H	104	111	Right-handed alpha
Helix 70	AH7	H	111	123	Right-handed alpha
Helix 71	AH8	H	136	144	Right-handed alpha
Helix 72	AH9	H	228	230	Right-handed 310
Helix 73	AI1	H	231	237	Right-handed alpha
Helix 74	AI2	H	247	253	Right-handed alpha
Helix 75	AI3	H	278	282	Right-handed 310
Helix 76	AI4	H	284	305	Right-handed alpha

There are 11 sheets in PDB entry 9X6W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	162	174	anti-parallel
Strand 3	A	241	246	anti-parallel
Strand 4	A	194	198	parallel
Strand 5	A	221	226	parallel
Strand 6	B	127	131	parallel
Strand 7	B	98	102	parallel
Strand 8	B	148	152	parallel
Strand 9	B	270	276	anti-parallel
Strand 10	B	162	174	anti-parallel
Strand 11	B	260	261	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	162	174	anti-parallel
Strand 3	A	270	276	anti-parallel
Strand 4	A	148	152	anti-parallel
Strand 5	A	98	102	parallel
Strand 6	A	127	131	parallel
Strand 7	B	222	226	parallel
Strand 8	B	195	198	parallel
Strand 9	B	242	246	parallel
Strand 10	B	162	174	anti-parallel
Strand 11	B	260	261	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	261	first strand
Strand 2	C	162	174	anti-parallel
Strand 3	C	242	246	anti-parallel
Strand 4	C	195	198	parallel
Strand 5	C	222	226	parallel
Strand 6	D	127	131	parallel
Strand 7	D	98	102	parallel
Strand 8	D	148	152	parallel
Strand 9	D	269	276	anti-parallel
Strand 10	D	162	174	anti-parallel
Strand 11	D	260	265	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	261	first strand
Strand 2	C	162	174	anti-parallel
Strand 3	C	270	276	anti-parallel
Strand 4	C	148	152	anti-parallel
Strand 5	C	98	102	parallel
Strand 6	C	127	131	parallel
Strand 7	D	221	226	parallel
Strand 8	D	194	198	parallel
Strand 9	D	241	246	parallel
Strand 10	D	162	174	anti-parallel
Strand 11	D	260	265	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	242	246	first strand
Strand 2	E	162	174	anti-parallel
Strand 3	E	260	262	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	242	246	first strand
Strand 2	E	162	174	anti-parallel
Strand 3	E	269	276	anti-parallel
Strand 4	E	148	152	anti-parallel
Strand 5	E	98	102	parallel
Strand 6	E	127	131	parallel
Strand 7	F	222	226	parallel
Strand 8	F	195	198	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	198	first strand
Strand 2	E	222	226	parallel
Strand 3	F	127	131	parallel
Strand 4	F	98	102	parallel
Strand 5	F	148	152	parallel
Strand 6	F	270	276	anti-parallel
Strand 7	F	167	173	anti-parallel
Strand 8	F	243	246	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	131	first strand
Strand 2	G	99	102	parallel
Strand 3	G	148	152	parallel
Strand 4	G	271	276	anti-parallel
Strand 5	G	163	168	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	260	261	first strand
Strand 2	G	170	174	anti-parallel
Strand 3	G	241	246	anti-parallel
Strand 4	G	194	198	parallel
Strand 5	G	222	226	parallel
Strand 6	H	127	131	parallel
Strand 7	H	98	102	parallel
Strand 8	H	148	152	parallel
Strand 9	H	269	276	anti-parallel
Strand 10	H	167	174	anti-parallel
Strand 11	H	243	246	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	260	261	first strand
Strand 2	G	170	174	anti-parallel
Strand 3	G	241	246	anti-parallel
Strand 4	G	194	198	parallel
Strand 5	G	222	226	parallel
Strand 6	H	127	131	parallel
Strand 7	H	98	102	parallel
Strand 8	H	148	152	parallel
Strand 9	H	269	276	anti-parallel
Strand 10	H	167	174	anti-parallel
Strand 11	H	260	261	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	195	197	first strand
Strand 2	H	222	225	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9X6W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9X6W