Analysis of interatomic Contacts of Structural Units in PDB entry:
9X8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9X8F entry

There is 1 chain in PDB entry 9X8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 35SER 667
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 9X8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 48Right-handed 310
Helix 2
AA2
A
54 58Right-handed 310
Helix 3
AA3
A
62 66Right-handed 310
Helix 4
AA4
A
85 92Right-handed alpha
Helix 5
AA5
A
92 100Right-handed alpha
Helix 6
AA6
A
141 155Right-handed alpha
Helix 7
AA7
A
230 237Right-handed alpha
Helix 8
AA8
A
249 267Right-handed alpha
Helix 9
AA9
A
276 280Right-handed 310
Helix 10
AB1
A
281 291Right-handed alpha
Helix 11
AB2
A
294 302Right-handed alpha
Helix 12
AB3
A
322 330Right-handed alpha
Helix 13
AB4
A
346 358Right-handed alpha
Helix 14
AB5
A
363 377Right-handed alpha
Helix 15
AB6
A
379 382Right-handed 310
Helix 16
AB7
A
394 398Right-handed 310
Helix 17
AB8
A
400 413Right-handed alpha
Helix 18
AB9
A
423 427Right-handed 310
Helix 19
AC1
A
454 470Right-handed alpha
Helix 20
AC2
A
470 476Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9X8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
308 311parallel
Strand 3
A
271 274parallel
Strand 4
A
158 163parallel
Strand 5
A
103 106parallel
Strand 6
A
50 53parallel
Strand 7
A
417 421parallel
Strand 8
A
384 385parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
129 135anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
121 122anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
189 191anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 482first strand
Strand 2
A
490 497anti-parallel
Strand 3
A
500 507anti-parallel
Strand 4
A
559 569anti-parallel
Strand 5
A
526 534anti-parallel
Strand 6
A
542 544anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 519first strand
Strand 2
A
550 555anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 581first strand
Strand 2
A
594 599anti-parallel
Strand 3
A
627 632anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 590first strand
Strand 2
A
660 666parallel
Strand 3
A
640 650anti-parallel
Strand 4
A
605 610anti-parallel
Strand 5
A
618 621anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 590first strand
Strand 2
A
660 666parallel
Strand 3
A
640 650anti-parallel
Strand 4
A
655 656anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il