Analysis of interatomic Contacts of Structural Units in PDB entry:
9X9J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9X9J entry

There are 3 chains in PDB entry 9X9J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 34	LEU 1047
B	GLY 34	LEU 1047
C	GLY 34	LEU 1047

There are 57 helices in PDB entry 9X9J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	257	266	Right-handed alpha
Helix 2	AA2	A	372	376	Right-handed 310
Helix 3	AA3	A	609	614	Right-handed alpha
Helix 4	AA4	A	618	623	Right-handed alpha
Helix 5	AA5	A	628	650	Right-handed alpha
Helix 6	AA6	A	655	660	Right-handed alpha
Helix 7	AA7	A	661	662	Right-handed 310
Helix 8	AA8	A	663	668	Right-handed 310
Helix 9	AA9	A	690	700	Right-handed alpha
Helix 10	AB1	A	704	708	Right-handed 310
Helix 11	AB2	A	713	718	Right-handed alpha
Helix 12	AB3	A	723	731	Right-handed alpha
Helix 13	AB4	A	743	756	Right-handed alpha
Helix 14	AB5	A	768	778	Right-handed alpha
Helix 15	AB6	A	790	811	Right-handed alpha
Helix 16	AB7	A	823	850	Right-handed alpha
Helix 17	AB8	A	861	869	Right-handed alpha
Helix 18	AB9	A	870	917	Right-handed alpha
Helix 19	AC1	A	1035	1042	Right-handed alpha
Helix 20	AC2	B	257	266	Right-handed alpha
Helix 21	AC3	B	372	376	Right-handed 310
Helix 22	AC4	B	609	614	Right-handed alpha
Helix 23	AC5	B	618	623	Right-handed alpha
Helix 24	AC6	B	628	650	Right-handed alpha
Helix 25	AC7	B	655	660	Right-handed alpha
Helix 26	AC8	B	661	662	Right-handed 310
Helix 27	AC9	B	663	668	Right-handed 310
Helix 28	AD1	B	690	700	Right-handed alpha
Helix 29	AD2	B	704	708	Right-handed 310
Helix 30	AD3	B	713	718	Right-handed alpha
Helix 31	AD4	B	723	731	Right-handed alpha
Helix 32	AD5	B	743	756	Right-handed alpha
Helix 33	AD6	B	768	778	Right-handed alpha
Helix 34	AD7	B	790	811	Right-handed alpha
Helix 35	AD8	B	823	850	Right-handed alpha
Helix 36	AD9	B	861	869	Right-handed alpha
Helix 37	AE1	B	870	917	Right-handed alpha
Helix 38	AE2	B	1035	1042	Right-handed alpha
Helix 39	AE3	C	257	266	Right-handed alpha
Helix 40	AE4	C	372	376	Right-handed 310
Helix 41	AE5	C	609	614	Right-handed alpha
Helix 42	AE6	C	618	623	Right-handed alpha
Helix 43	AE7	C	628	650	Right-handed alpha
Helix 44	AE8	C	655	660	Right-handed alpha
Helix 45	AE9	C	661	662	Right-handed 310
Helix 46	AF1	C	663	668	Right-handed 310
Helix 47	AF2	C	690	700	Right-handed alpha
Helix 48	AF3	C	704	708	Right-handed 310
Helix 49	AF4	C	713	718	Right-handed alpha
Helix 50	AF5	C	723	731	Right-handed alpha
Helix 51	AF6	C	743	756	Right-handed alpha
Helix 52	AF7	C	768	778	Right-handed alpha
Helix 53	AF8	C	790	811	Right-handed alpha
Helix 54	AF9	C	823	850	Right-handed alpha
Helix 55	AG1	C	861	869	Right-handed alpha
Helix 56	AG2	C	870	917	Right-handed alpha
Helix 57	AG3	C	1035	1042	Right-handed alpha

There are 54 sheets in PDB entry 9X9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	82	first strand
Strand 2	A	233	242	anti-parallel
Strand 3	A	116	118	anti-parallel
Strand 4	A	194	196	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	184	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	A	139	146	anti-parallel
Strand 4	A	132	136	anti-parallel
Strand 5	A	217	219	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	206	210	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	248	249	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	278	first strand
Strand 2	A	501	506	anti-parallel
Strand 3	A	509	514	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	303	306	anti-parallel
Strand 3	A	349	352	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	A	425	427	parallel
Strand 3	A	381	382	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	415	416	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	410	411	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	448	first strand
Strand 2	A	457	463	anti-parallel
Strand 3	A	491	495	anti-parallel
Strand 4	A	482	484	anti-parallel
Strand 5	A	472	473	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	528	first strand
Strand 2	A	535	537	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	550	first strand
Strand 2	A	553	555	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	585	first strand
Strand 2	A	957	959	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	593	first strand
Strand 2	A	944	953	anti-parallel
Strand 3	A	596	597	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	593	first strand
Strand 2	A	944	953	anti-parallel
Strand 3	A	932	941	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	606	first strand
Strand 2	A	733	735	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	973	976	first strand
Strand 2	A	1008	1011	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	981	983	first strand
Strand 2	A	992	994	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	82	first strand
Strand 2	B	233	242	anti-parallel
Strand 3	B	116	118	anti-parallel
Strand 4	B	194	196	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	184	first strand
Strand 2	B	167	174	anti-parallel
Strand 3	B	139	146	anti-parallel
Strand 4	B	132	136	anti-parallel
Strand 5	B	217	219	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	203	first strand
Strand 2	B	206	210	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	245	first strand
Strand 2	B	248	249	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	501	506	anti-parallel
Strand 3	B	509	514	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	329	first strand
Strand 2	B	303	306	anti-parallel
Strand 3	B	349	352	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	346	first strand
Strand 2	B	425	427	parallel
Strand 3	B	381	382	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	398	first strand
Strand 2	B	415	416	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	402	first strand
Strand 2	B	410	411	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	448	first strand
Strand 2	B	457	463	anti-parallel
Strand 3	B	491	495	anti-parallel
Strand 4	B	482	484	anti-parallel
Strand 5	B	472	473	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	528	first strand
Strand 2	B	535	537	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	550	first strand
Strand 2	B	553	555	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	585	first strand
Strand 2	B	957	959	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	593	first strand
Strand 2	B	944	953	anti-parallel
Strand 3	B	596	597	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	593	first strand
Strand 2	B	944	953	anti-parallel
Strand 3	B	932	941	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	604	606	first strand
Strand 2	B	733	735	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	973	976	first strand
Strand 2	B	1008	1011	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	981	983	first strand
Strand 2	B	992	994	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	82	first strand
Strand 2	C	233	242	anti-parallel
Strand 3	C	116	118	anti-parallel
Strand 4	C	194	196	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	184	first strand
Strand 2	C	167	174	anti-parallel
Strand 3	C	139	146	anti-parallel
Strand 4	C	132	136	anti-parallel
Strand 5	C	217	219	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	203	first strand
Strand 2	C	206	210	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	245	first strand
Strand 2	C	248	249	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	278	first strand
Strand 2	C	501	506	anti-parallel
Strand 3	C	509	514	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	329	first strand
Strand 2	C	303	306	anti-parallel
Strand 3	C	349	352	parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	346	first strand
Strand 2	C	425	427	parallel
Strand 3	C	381	382	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	398	first strand
Strand 2	C	415	416	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	402	first strand
Strand 2	C	410	411	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	448	first strand
Strand 2	C	457	463	anti-parallel
Strand 3	C	491	495	anti-parallel
Strand 4	C	482	484	anti-parallel
Strand 5	C	472	473	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	526	528	first strand
Strand 2	C	535	537	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	548	550	first strand
Strand 2	C	553	555	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	583	585	first strand
Strand 2	C	957	959	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	589	593	first strand
Strand 2	C	944	953	anti-parallel
Strand 3	C	596	597	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	589	593	first strand
Strand 2	C	944	953	anti-parallel
Strand 3	C	932	941	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	604	606	first strand
Strand 2	C	733	735	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	973	976	first strand
Strand 2	C	1008	1011	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	981	983	first strand
Strand 2	C	992	994	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9X9J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9X9J