Analysis of interatomic Contacts of Structural Units in PDB entry:
9XCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9XCM entry

There are 3 chains in PDB entry 9XCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 THR 7PHE 377
A
 PHE 79SER 638
B
 MET 9SER 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 57 helices in PDB entry 9XCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
81 93Right-handed alpha
Helix 2
AA2
C
99 103Right-handed 310
Helix 3
AA3
C
114 128Right-handed alpha
Helix 4
AA4
C
139 146Right-handed alpha
Helix 5
AA5
C
174 177Right-handed 310
Helix 6
AA6
C
185 195Right-handed alpha
Helix 7
AA7
C
207 215Right-handed alpha
Helix 8
AA8
C
224 232Right-handed alpha
Helix 9
AA9
C
259 263Right-handed 310
Helix 10
AB1
C
265 270Right-handed 310
Helix 11
AB2
C
277 285Right-handed alpha
Helix 12
AB3
C
291 297Right-handed alpha
Helix 13
AB4
C
310 321Right-handed alpha
Helix 14
AB5
C
339 349Right-handed alpha
Helix 15
AB6
C
353 357Right-handed 310
Helix 16
AB7
C
361 368Right-handed alpha
Helix 17
AB8
C
370 375Right-handed alpha
Helix 18
AB9
A
80 91Right-handed alpha
Helix 19
AC1
A
93 95Right-handed 310
Helix 20
AC2
A
96 110Right-handed alpha
Helix 21
AC3
A
114 119Right-handed alpha
Helix 22
AC4
A
128 135Right-handed alpha
Helix 23
AC5
A
151 159Right-handed alpha
Helix 24
AC6
A
162 175Right-handed alpha
Helix 25
AC7
A
190 202Right-handed alpha
Helix 26
AC8
A
206 215Right-handed alpha
Helix 27
AC9
A
245 250Right-handed alpha
Helix 28
AD1
A
257 272Right-handed alpha
Helix 29
AD2
A
278 289Right-handed alpha
Helix 30
AD3
A
294 303Right-handed alpha
Helix 31
AD4
A
335 351Right-handed alpha
Helix 32
AD5
A
352 354Right-handed 310
Helix 33
AD6
A
355 360Right-handed alpha
Helix 34
AD7
A
372 386Right-handed alpha
Helix 35
AD8
A
386 391Right-handed alpha
Helix 36
AD9
A
392 395Right-handed 310
Helix 37
AE1
A
399 412Right-handed alpha
Helix 38
AE2
A
421 429Right-handed alpha
Helix 39
AE3
A
430 435Right-handed alpha
Helix 40
AE4
A
460 464Right-handed 310
Helix 41
AE5
A
483 487Right-handed 310
Helix 42
AE6
A
528 544Right-handed alpha
Helix 43
AE7
A
549 568Right-handed alpha
Helix 44
AE8
A
573 581Right-handed alpha
Helix 45
AE9
A
582 592Right-handed alpha
Helix 46
AF1
A
598 603Right-handed alpha
Helix 47
AF2
A
608 637Right-handed alpha
Helix 48
AF3
B
15 21Right-handed alpha
Helix 49
AF4
B
27 36Right-handed alpha
Helix 50
AF5
B
52 57Right-handed alpha
Helix 51
AF6
B
64 74Right-handed alpha
Helix 52
AF7
B
88 96Right-handed alpha
Helix 53
AF8
B
101 107Right-handed alpha
Helix 54
AF9
B
115 120Right-handed 310
Helix 55
AG1
B
131 144Right-handed alpha
Helix 56
AG2
B
182 187Right-handed alpha
Helix 57
AG3
B
209 231Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9XCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 22first strand
Strand 2
C
10 13anti-parallel
Strand 3
C
105 109parallel
Strand 4
C
133 138parallel
Strand 5
C
359 360anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 39first strand
Strand 2
C
68 70anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 74first strand
Strand 2
C
77 78anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 172first strand
Strand 2
C
162 168anti-parallel
Strand 3
C
178 180anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 172first strand
Strand 2
C
162 168anti-parallel
Strand 3
C
152 157anti-parallel
Strand 4
C
299 303parallel
Strand 5
C
331 332parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
240 243first strand
Strand 2
C
249 252anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
500 501anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 470first strand
Strand 2
A
491 492anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il