Analysis of interatomic Contacts of Structural Units in PDB entry:
9XD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9XD6 entry

There are 2 chains in PDB entry 9XD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 927SER 3226
C
 U 3 A 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 9XD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
930 947Right-handed alpha
Helix 2
AA2
A
955 967Right-handed alpha
Helix 3
AA3
A
973 987Right-handed alpha
Helix 4
AA4
A
987 997Right-handed alpha
Helix 5
AA5
A
1008 1024Right-handed alpha
Helix 6
AA6
A
1028 1041Right-handed alpha
Helix 7
AA7
A
1044 1057Right-handed alpha
Helix 8
AA8
A
1058 1061Right-handed 310
Helix 9
AA9
A
1076 1081Right-handed alpha
Helix 10
AB1
A
1084 1088Right-handed 310
Helix 11
AB2
A
1104 1111Right-handed alpha
Helix 12
AB3
A
1118 1139Right-handed alpha
Helix 13
AB4
A
1175 1186Right-handed alpha
Helix 14
AB5
A
1196 1208Right-handed alpha
Helix 15
AB6
A
1221 1234Right-handed alpha
Helix 16
AB7
A
1266 1278Right-handed alpha
Helix 17
AB8
A
1291 1296Right-handed alpha
Helix 18
AB9
A
1297 1309Right-handed alpha
Helix 19
AC1
A
1315 1328Right-handed alpha
Helix 20
AC2
A
1330 1350Right-handed alpha
Helix 21
AC3
A
1401 1426Right-handed alpha
Helix 22
AC4
A
1429 1435Right-handed 310
Helix 23
AC5
A
1436 1463Right-handed alpha
Helix 24
AC6
A
1465 1481Right-handed alpha
Helix 25
AC7
A
1487 1505Right-handed alpha
Helix 26
AC8
A
1507 1514Right-handed alpha
Helix 27
AC9
A
1515 1524Right-handed alpha
Helix 28
AD1
A
1524 1531Right-handed alpha
Helix 29
AD2
A
1532 1534Right-handed 310
Helix 30
AD3
A
1543 1547Right-handed 310
Helix 31
AD4
A
1552 1572Right-handed alpha
Helix 32
AD5
A
1572 1581Right-handed alpha
Helix 33
AD6
A
1603 1611Right-handed alpha
Helix 34
AD7
A
1612 1616Right-handed 310
Helix 35
AD8
A
1631 1651Right-handed alpha
Helix 36
AD9
A
1758 1773Right-handed alpha
Helix 37
AE1
A
1780 1792Right-handed alpha
Helix 38
AE2
A
1793 1795Right-handed 310
Helix 39
AE3
A
1796 1805Right-handed alpha
Helix 40
AE4
A
2295 2305Right-handed alpha
Helix 41
AE5
A
2317 2335Right-handed alpha
Helix 42
AE6
A
2367 2379Right-handed alpha
Helix 43
AE7
A
2382 2396Right-handed alpha
Helix 44
AE8
A
2447 2457Right-handed alpha
Helix 45
AE9
A
2478 2503Right-handed alpha
Helix 46
AF1
A
2530 2559Right-handed alpha
Helix 47
AF2
A
2589 2594Right-handed 310
Helix 48
AF3
A
2595 2600Right-handed alpha
Helix 49
AF4
A
2605 2623Right-handed alpha
Helix 50
AF5
A
2626 2645Right-handed alpha
Helix 51
AF6
A
2645 2652Right-handed alpha
Helix 52
AF7
A
2652 2657Right-handed alpha
Helix 53
AF8
A
2658 2659Right-handed 310
Helix 54
AF9
A
2660 2664Right-handed 310
Helix 55
AG1
A
2671 2675Right-handed 310
Helix 56
AG2
A
2678 2697Right-handed alpha
Helix 57
AG3
A
2753 2764Right-handed alpha
Helix 58
AG4
A
2771 2783Right-handed alpha
Helix 59
AG5
A
2801 2805Right-handed 310
Helix 60
AG6
A
2806 2816Right-handed alpha
Helix 61
AG7
A
2818 2836Right-handed alpha
Helix 62
AG8
A
2899 2910Right-handed alpha
Helix 63
AG9
A
2945 2953Right-handed alpha
Helix 64
AH1
A
2994 3003Right-handed alpha
Helix 65
AH2
A
3043 3060Right-handed alpha
Helix 66
AH3
A
3062 3073Right-handed alpha
Helix 67
AH4
A
3093 3100Right-handed alpha
Helix 68
AH5
A
3104 3112Right-handed alpha
Helix 69
AH6
A
3116 3122Right-handed alpha
Helix 70
AH7
A
3131 3141Right-handed alpha
Helix 71
AH8
A
3142 3163Right-handed alpha
Helix 72
AH9
A
3166 3185Right-handed alpha
Helix 73
AI1
A
3208 3217Right-handed alpha
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There are 10 sheets in PDB entry 9XD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
971 972first strand
Strand 2
A
1754 1755parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1003 1004first strand
Strand 2
A
1536 1537anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1151 1152first strand
Strand 2
A
1143 1145anti-parallel
Strand 3
A
1219 1220anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1357 1362first strand
Strand 2
A
1369 1374anti-parallel
Strand 3
A
1382 1387anti-parallel
Strand 4
A
1393 1400anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2507 2511first strand
Strand 2
A
2518 2529anti-parallel
Strand 3
A
2347 2358anti-parallel
Strand 4
A
2568 2570anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2574 2576first strand
Strand 2
A
2579 2581anti-parallel
Strand 3
A
2586 2587anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2956 2959first strand
Strand 2
A
2991 2993anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3004 3009first strand
Strand 2
A
3037 3042parallel
Strand 3
A
3027 3031anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3078 3081first strand
Strand 2
A
3221 3224anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3086 3089first strand
Strand 2
A
3196 3199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il