Analysis of interatomic Contacts of Structural Units in PDB entry:
9XFO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XFO entry

There are 6 chains in PDB entry 9XFO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 23	TRP 810
B	LEU 22	ARG 392
C	SER 29	LYS 344
D	GLU 26	SER 243
E	THR 22	SER 111
F	ALA 21	SER 427

There are 49 helices in PDB entry 9XFO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	69	Right-handed alpha
Helix 3	AA3	A	106	117	Right-handed alpha
Helix 4	AA4	A	126	144	Right-handed alpha
Helix 5	AA5	A	189	195	Right-handed alpha
Helix 6	AA6	A	215	232	Right-handed alpha
Helix 7	AA7	A	280	288	Right-handed alpha
Helix 8	AA8	A	297	315	Right-handed alpha
Helix 9	AA9	A	361	367	Right-handed alpha
Helix 10	AB1	A	380	393	Right-handed alpha
Helix 11	AB2	A	448	452	Right-handed 310
Helix 12	AB3	A	496	500	Right-handed 310
Helix 13	AB4	A	542	552	Right-handed alpha
Helix 14	AB5	A	647	651	Right-handed 310
Helix 15	AB6	A	729	731	Right-handed 310
Helix 16	AB7	C	29	33	Right-handed 310
Helix 17	AB8	C	39	43	Right-handed 310
Helix 18	AB9	C	76	80	Right-handed 310
Helix 19	AC1	C	112	114	Right-handed 310
Helix 20	AC2	C	115	127	Right-handed alpha
Helix 21	AC3	C	190	214	Right-handed alpha
Helix 22	AC4	C	247	262	Right-handed alpha
Helix 23	AC5	C	284	292	Right-handed alpha
Helix 24	AC6	C	327	344	Right-handed alpha
Helix 25	AC7	D	31	46	Right-handed alpha
Helix 26	AC8	D	47	61	Right-handed alpha
Helix 27	AC9	D	68	83	Right-handed alpha
Helix 28	AD1	D	84	99	Right-handed alpha
Helix 29	AD2	D	104	120	Right-handed alpha
Helix 30	AD3	D	122	128	Right-handed alpha
Helix 31	AD4	D	137	154	Right-handed alpha
Helix 32	AD5	D	159	189	Right-handed alpha
Helix 33	AD6	D	190	205	Right-handed alpha
Helix 34	AD7	D	208	225	Right-handed alpha
Helix 35	AD8	D	229	243	Right-handed alpha
Helix 36	AD9	E	39	45	Right-handed alpha
Helix 37	AE1	E	51	60	Right-handed alpha
Helix 38	AE2	F	39	57	Right-handed alpha
Helix 39	AE3	F	62	88	Right-handed alpha
Helix 40	AE4	F	92	107	Right-handed alpha
Helix 41	AE5	F	110	121	Right-handed alpha
Helix 42	AE6	F	124	150	Right-handed alpha
Helix 43	AE7	F	153	167	Right-handed alpha
Helix 44	AE8	F	299	316	Right-handed alpha
Helix 45	AE9	F	320	329	Right-handed alpha
Helix 46	AF1	F	331	336	Right-handed alpha
Helix 47	AF2	F	345	349	Right-handed 310
Helix 48	AF3	F	350	360	Right-handed alpha
Helix 49	AF4	F	388	421	Right-handed alpha

There are 22 sheets in PDB entry 9XFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	83	90	parallel
Strand 3	A	72	78	anti-parallel
Strand 4	F	24	26	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	162	169	parallel
Strand 3	A	151	157	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	183	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	247	anti-parallel
Strand 4	B	192	194	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	276	first strand
Strand 2	A	334	342	parallel
Strand 3	A	321	329	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	A	411	420	parallel
Strand 3	A	395	404	anti-parallel

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There are 16 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	429	first strand
Strand 2	A	440	446	anti-parallel
Strand 3	A	455	462	anti-parallel
Strand 4	A	467	475	anti-parallel
Strand 5	A	484	493	anti-parallel
Strand 6	A	505	518	anti-parallel
Strand 7	A	523	537	anti-parallel
Strand 8	A	564	579	anti-parallel
Strand 9	A	590	600	anti-parallel
Strand 10	A	608	620	anti-parallel
Strand 11	A	628	640	anti-parallel
Strand 12	A	710	720	anti-parallel
Strand 13	A	733	745	anti-parallel
Strand 14	A	767	778	anti-parallel
Strand 15	A	781	792	anti-parallel
Strand 16	A	802	806	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	674	first strand
Strand 2	A	700	705	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	386	391	anti-parallel
Strand 3	B	377	381	anti-parallel
Strand 4	B	372	374	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	91	96	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	181	186	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	210	first strand
Strand 2	B	215	220	anti-parallel
Strand 3	B	226	231	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	261	anti-parallel
Strand 3	B	267	271	anti-parallel
Strand 4	B	277	281	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	317	319	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	345	350	anti-parallel
Strand 4	B	356	361	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	100	first strand
Strand 2	C	103	109	anti-parallel
Strand 3	C	171	183	anti-parallel
Strand 4	C	157	166	anti-parallel
Strand 5	C	146	147	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	135	first strand
Strand 2	C	140	143	anti-parallel
Strand 3	C	157	166	anti-parallel
Strand 4	C	171	183	anti-parallel
Strand 5	C	186	187	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	234	first strand
Strand 2	C	240	244	anti-parallel
Strand 3	C	314	319	anti-parallel
Strand 4	C	301	308	anti-parallel
Strand 5	C	275	280	anti-parallel
Strand 6	C	264	270	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	64	65	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	87	95	anti-parallel
Strand 4	E	101	107	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	28	32	anti-parallel
Strand 3	F	423	425	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	340	344	first strand
Strand 2	F	282	292	anti-parallel
Strand 3	F	374	386	anti-parallel
Strand 4	F	369	371	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XFO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XFO